{ "type": "genome", "identifier": "GCF_005670695.1", "organism": "Mycolicibacterium aubagnense", "title": "Mycolicibacterium aubagnense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005670695.1", "bioproject": "PRJNA224116", "biosample": "SAMN08339098", "wgs_master": "POTN00000000.1", "refseq_category": "na", "taxid": "319707", "species_taxid": "319707", "organism_name": "Mycolicibacterium aubagnense", "infraspecific_name": "strain=DSM 45150", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/23", "asm_name": "ASM567069v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_005670695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/670/695/GCF_005670695.1_ASM567069v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6191633", "genome_size_ungapped": "6191255", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005670695.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "6032", "protein_coding_gene_count": "5810", "non_coding_gene_count": "86", "pubmed_id": "31215393;31848383" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-23", "dateModified": "2019-05-23", "datePublished": "2019-05-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium aubagnense" ], "sample_taxid": [ "319707" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Marseille" ], "sample_host_location_id": [], "data_size": "1.710 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6191633", "Number of Sequences": "85", "Longest Sequences (bp)": "510248", "N50 (bp)": "180243", "Gap Ratio (%)": "0.007962", "GCcontent (%)": "66.4", "Number of CDSs": "5951", "Average Protein Length": "312.5", "Coding Ratio (%)": "90.1", "Number of rRNAs": "3", "Number of tRNAs": "82", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium aubagnense", "strain": "strain=DSM 45150", "accession": "GCA_005670695.1", "taxid": 319707, "species_taxid": 319707, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2022, "total_fragments": 2024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium llatzerense", "strain": "strain=MG13", "accession": "GCA_025331195.1", "taxid": 280871, "species_taxid": 280871, "relation_to_type": "type", "validated": true, "ani": 88.7349, "matched_fragments": 1514, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phocaicum", "strain": "strain=JCM 15301", "accession": "GCA_010731115.1", "taxid": 319706, "species_taxid": 319706, "relation_to_type": "type", "validated": true, "ani": 88.6879, "matched_fragments": 1457, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phocaicum", "strain": "strain=DSM 45104", "accession": "GCA_005670655.1", "taxid": 319706, "species_taxid": 319706, "relation_to_type": "type", "validated": true, "ani": 88.6695, "matched_fragments": 1448, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_005670675.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 80.3415, "matched_fragments": 925, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium boenickei", "strain": "strain=JCM 15653", "accession": "GCA_010731295.1", "taxid": 146017, "species_taxid": 146017, "relation_to_type": "type", "validated": true, "ani": 80.3027, "matched_fragments": 904, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium canariasense", "strain": "strain=JCM15298", "accession": "GCA_001570445.1", "taxid": 228230, "species_taxid": 228230, "relation_to_type": "type", "validated": true, "ani": 80.281, "matched_fragments": 859, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.1595, "matched_fragments": 864, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium septicum", "strain": "strain=ATCC 700731", "accession": "GCA_012396425.1", "taxid": 98668, "species_taxid": 98668, "relation_to_type": "type", "validated": true, "ani": 80.0832, "matched_fragments": 923, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 80.0525, "matched_fragments": 855, "total_fragments": 2024, "ani_threshold": 95, "status": "below_threshold" }, { 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