{
    "type": "genome",
    "identifier": "GCF_005747095.1",
    "organism": "Pseudalkalibacillus caeni",
    "title": "Pseudalkalibacillus caeni",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Academy of Tropical Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005747095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11521716",
        "wgs_master": "SWLG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2574798",
        "species_taxid": "2574798",
        "organism_name": "Pseudalkalibacillus caeni",
        "infraspecific_name": "strain=HB172195",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/23",
        "asm_name": "ASM574709v1",
        "asm_submitter": "Chinese Academy of Tropical Agricultural Sciences",
        "gbrs_paired_asm": "GCA_005747095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/747/095/GCF_005747095.1_ASM574709v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4703601",
        "genome_size_ungapped": "4703601",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "54",
        "contig_count": "54",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_005747095.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "4850",
        "protein_coding_gene_count": "4673",
        "non_coding_gene_count": "142",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-23",
    "dateModified": "2019-05-23",
    "datePublished": "2019-05-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudalkalibacillus caeni"
        ],
        "sample_taxid": [
            "2574798"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Wenchang"
        ],
        "sample_host_location_id": [],
        "data_size": "1.339 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4703601",
        "Number of Sequences": "54",
        "Longest Sequences (bp)": "712649",
        "N50 (bp)": "267075",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.9",
        "Number of CDSs": "4707",
        "Average Protein Length": "281.7",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "5",
        "Number of tRNAs": "107",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudalkalibacillus caeni",
                "strain": "strain=HB172195",
                "accession": "GCA_005747095.1",
                "taxid": 2574798,
                "species_taxid": 2574798,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1542,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacillus dafuensis",
                "strain": "strain=FJAT-25496",
                "accession": "GCA_007995155.1",
                "taxid": 1742359,
                "species_taxid": 1742359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.756,
                "matched_fragments": 52,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metabacillus idriensis",
                "strain": "strain=DSM 19097",
                "accession": "GCA_009674765.1",
                "taxid": 324768,
                "species_taxid": 324768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5207,
                "matched_fragments": 55,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metabacillus idriensis",
                "strain": "strain=DSM-19097",
                "accession": "GCA_904423875.1",
                "taxid": 324768,
                "species_taxid": 324768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5146,
                "matched_fragments": 56,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalihalophilus marmarensis",
                "strain": "strain=DSM 21297",
                "accession": "GCA_000474275.2",
                "taxid": 521377,
                "species_taxid": 521377,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.429,
                "matched_fragments": 51,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sutcliffiella cohnii",
                "strain": "strain=DSM 6307",
                "accession": "GCA_002250055.1",
                "taxid": 33932,
                "species_taxid": 33932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0444,
                "matched_fragments": 56,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gottfriedia solisilvae",
                "strain": "strain=CGMCC 1.14993",
                "accession": "GCA_014640495.1",
                "taxid": 1516104,
                "species_taxid": 1516104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9609,
                "matched_fragments": 51,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sutcliffiella cohnii",
                "strain": "strain=NBRC 15565",
                "accession": "GCA_001591425.1",
                "taxid": 33932,
                "species_taxid": 33932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7364,
                "matched_fragments": 54,
                "total_fragments": 1544,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_005747095.1",
                "gtdb_species": "s__Bacillus_BR caeni",
                "ani": 100.0,
                "matched_fragments": 1542,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__HB172195;g__Bacillus_BR",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_017303315.1",
                "gtdb_species": "s__Anaerobacillus_A sp017303315",
                "ani": 76.8499,
                "matched_fragments": 102,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__HB172195;g__Anaerobacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005144865.1",
                "gtdb_species": "s__Anaerobacillus_A hwajinpoensis_A",
                "ani": 76.8269,
                "matched_fragments": 111,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__HB172195;g__Anaerobacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002734285.1",
                "gtdb_species": "s__Fredinandcohnia onubensis_A",
                "ani": 76.7142,
                "matched_fragments": 50,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Fredinandcohnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007995155.1",
                "gtdb_species": "s__Cytobacillus dafuensis",
                "ani": 76.6138,
                "matched_fragments": 52,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003400205.1",
                "gtdb_species": "s__Fredinandcohnia sp003400205",
                "ani": 76.5941,
                "matched_fragments": 52,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Fredinandcohnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014635025.1",
                "gtdb_species": "s__Fictibacillus barbaricus",
                "ani": 76.5121,
                "matched_fragments": 57,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018613315.1",
                "gtdb_species": "s__Mesobacillus sp018613315",
                "ani": 76.4173,
                "matched_fragments": 50,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001636345.1",
                "gtdb_species": "s__Cytobacillus gottheilii",
                "ani": 76.2214,
                "matched_fragments": 57,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.50",
                "min_intra_species_ani": "95.11",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001884135.1",
                "gtdb_species": "s__Bacillus_A nitratireducens",
                "ani": 76.2013,
                "matched_fragments": 50,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
                "min_intra_species_ani": "95.62",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 78,
                "status": "-"
            },
            {
                "accession": "GCF_002250055.1",
                "gtdb_species": "s__Sutcliffiella cohnii",
                "ani": 76.0978,
                "matched_fragments": 57,
                "total_fragments": 1544,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_I;g__Sutcliffiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Pseudalkalibacillus",
        "caeni"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}