{ "type": "genome", "identifier": "GCF_005768555.2", "organism": "Streptomyces sporangiiformans", "title": "Streptomyces sporangiiformans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005768555.2", "bioproject": "PRJNA224116", "biosample": "SAMN11792039", "wgs_master": "VCHX00000000.2", "refseq_category": "reference genome", "taxid": "2315329", "species_taxid": "2315329", "organism_name": "Streptomyces sporangiiformans", "infraspecific_name": "strain=NEAU-SSA 1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/25", "asm_name": "ASM576855v2", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_005768555.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/768/555/GCF_005768555.2_ASM576855v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10364704", "genome_size_ungapped": "10364658", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "352", "contig_count": "352", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005768555.2-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "9386", "protein_coding_gene_count": "8891", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-25", "dateModified": "2019-06-25", "datePublished": "2019-06-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces sporangiiformans" ], "sample_taxid": [ "2315329" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Henan" ], "sample_host_location_id": [], "data_size": "2.832 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10364704", "Number of Sequences": "352", "Longest Sequences (bp)": "264494", "N50 (bp)": "59982", "Gap Ratio (%)": "0.001544", "GCcontent (%)": "69.9", "Number of CDSs": "9179", "Average Protein Length": "319.4", "Coding Ratio (%)": "84.9", "Number of rRNAs": "2", "Number of tRNAs": "75", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces sporangiiformans", "strain": "strain=NEAU-SSA 1", "accession": "GCA_005768555.2", "taxid": 2315329, "species_taxid": 2315329, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3275, "total_fragments": 3293, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces sporangiiformans", "strain": "strain=NEAU-SSA 1", "accession": "GCA_003568675.1", "taxid": 2315329, "species_taxid": 2315329, "relation_to_type": "type", "validated": true, "ani": 99.9988, "matched_fragments": 3274, "total_fragments": 3293, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces montanus", "strain": "strain=NEAU-C151", "accession": "GCA_005786655.1", "taxid": 2580423, "species_taxid": 2580423, "relation_to_type": "type", "validated": true, "ani": 95.7594, "matched_fragments": 2706, "total_fragments": 3293, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces scabichelini", "strain": "strain=HC44", "accession": "GCA_011045015.1", "taxid": 2711217, "species_taxid": 2711217, "relation_to_type": "type", "validated": true, "ani": 88.1964, "matched_fragments": 2154, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces phaeochromogenes", "strain": "strain=NRRL B-1248", "accession": "GCA_001418655.1", "taxid": 1923, "species_taxid": 1923, "relation_to_type": "type", "validated": true, "ani": 85.9743, "matched_fragments": 1952, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces umbrinus", "strain": "strain=JCM 4521", "accession": "GCA_014650195.1", "taxid": 67370, "species_taxid": 67370, "relation_to_type": "type", "validated": true, "ani": 85.9029, "matched_fragments": 2169, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces aurantiacus", "strain": "strain=NRRL ISP-5412", "accession": "GCA_001418335.1", "taxid": 47760, "species_taxid": 47760, "relation_to_type": "type", "validated": true, "ani": 85.219, "matched_fragments": 1575, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces dengpaensis", "strain": "strain=XZHG99", "accession": "GCA_002946835.1", "taxid": 2049881, "species_taxid": 2049881, "relation_to_type": "type", "validated": true, "ani": 84.876, "matched_fragments": 1651, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces swartbergensis", "strain": "strain=HMC13", "accession": "GCA_002148965.1", "taxid": 487165, "species_taxid": 487165, "relation_to_type": "type", "validated": true, "ani": 83.8302, "matched_fragments": 1629, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 83.732, "matched_fragments": 1679, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces janthinus", "strain": "strain=JCM 4387", "accession": "GCA_014649675.1", "taxid": 67308, "species_taxid": 67308, "relation_to_type": "type", "validated": true, "ani": 83.7212, "matched_fragments": 1897, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violarus", "strain": "strain=CECT 3237", "accession": "GCA_014191845.1", "taxid": 67380, "species_taxid": 67380, "relation_to_type": "type", "validated": true, "ani": 83.7084, "matched_fragments": 1890, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces deccanensis", "strain": "strain=KCTC 19241", "accession": "GCA_022385335.1", "taxid": 424188, "species_taxid": 424188, "relation_to_type": "type", "validated": true, "ani": 83.493, "matched_fragments": 1923, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces glomeratus", "strain": "strain=DSM 41457", "accession": "GCA_021462825.1", "taxid": 284452, "species_taxid": 284452, "relation_to_type": "type", "validated": true, "ani": 83.3804, "matched_fragments": 1488, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caniscabiei", "strain": "strain=NE06-02D", "accession": "GCA_014930365.1", "taxid": 2746961, "species_taxid": 2746961, "relation_to_type": "type", "validated": true, "ani": 83.377, "matched_fragments": 1914, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hokutonensis", "strain": "strain=R1-NS-10", "accession": "GCA_000376565.1", "taxid": 1306990, "species_taxid": 1306990, "relation_to_type": "type", "validated": true, "ani": 83.2465, "matched_fragments": 1800, "total_fragments": 3293, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005768555.2", "gtdb_species": "s__Streptomyces sporangiiformans", "ani": 100.0, "matched_fragments": 3275, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "95.85", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_011045015.1", "gtdb_species": "s__Streptomyces scabichelini", "ani": 88.1919, "matched_fragments": 2154, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014647675.1", "gtdb_species": "s__Streptomyces flaveus", "ani": 87.7759, "matched_fragments": 2210, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.63", "min_intra_species_ani": "96.63", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011045025.1", "gtdb_species": "s__Streptomyces ureilyticus", "ani": 87.3399, "matched_fragments": 2067, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008905045.1", "gtdb_species": "s__Streptomyces albicerus", "ani": 86.8824, "matched_fragments": 2229, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007050945.1", "gtdb_species": "s__Streptomyces sp007050945", "ani": 86.0815, "matched_fragments": 2177, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001418655.1", "gtdb_species": "s__Streptomyces phaeochromogenes", "ani": 85.9543, "matched_fragments": 1955, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.97", "min_intra_species_ani": "95.89", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016598615.1", "gtdb_species": "s__Streptomyces sp016598615", "ani": 85.9441, "matched_fragments": 2173, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002946835.1", "gtdb_species": "s__Streptomyces dengpaensis", "ani": 84.8712, "matched_fragments": 1652, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008369065.1", "gtdb_species": "s__Streptomyces sp008369065", "ani": 84.8606, "matched_fragments": 1710, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014649375.1", "gtdb_species": "s__Streptomyces aurantiogriseus", "ani": 83.9943, "matched_fragments": 1942, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002148965.1", "gtdb_species": "s__Streptomyces swartbergensis", "ani": 83.803, "matched_fragments": 1635, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015712165.1", "gtdb_species": "s__Streptomyces spinoverrucosus_A", "ani": 83.6222, "matched_fragments": 1729, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000715635.1", "gtdb_species": "s__Streptomyces violaceus", "ani": 83.5944, "matched_fragments": 1925, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.39", "min_intra_species_ani": "95.19", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000376565.1", "gtdb_species": "s__Streptomyces hokutonensis", "ani": 83.2258, "matched_fragments": 1802, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.37", "min_intra_species_ani": "96.37", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002920535.1", "gtdb_species": "s__Streptomyces sp002920535", "ani": 83.076, "matched_fragments": 1569, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648855.1", "gtdb_species": "s__Streptomyces parvulus", "ani": 82.9528, "matched_fragments": 1526, "total_fragments": 3293, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "95.93", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.757, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 0.998, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "sporangiiformans" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }