{ "type": "genome", "identifier": "GCF_005771535.1", "organism": "Arcobacter arenosus", "title": "Arcobacter arenosus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005771535.1", "bioproject": "PRJNA224116", "biosample": "SAMN11567987", "wgs_master": "VANU00000000.1", "refseq_category": "reference genome", "taxid": "2576037", "species_taxid": "2576037", "organism_name": "Arcobacter arenosus", "infraspecific_name": "strain=CAU 1517", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/23", "asm_name": "ASM577153v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_005771535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/771/535/GCF_005771535.1_ASM577153v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3134893", "genome_size_ungapped": "3134603", "gc_percent": "28.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005771535.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3144", "protein_coding_gene_count": "3089", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-23", "dateModified": "2019-05-23", "datePublished": "2019-05-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Arcobacter arenosus" ], "sample_taxid": [ "2576037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.844 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3134893", "Number of Sequences": "18", "Longest Sequences (bp)": "859748", "N50 (bp)": "398582", "Gap Ratio (%)": "0.009251", "GCcontent (%)": "28.1", "Number of CDSs": "3096", "Average Protein Length": "316.7", "Coding Ratio (%)": "93.8", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "[Halarcobacter] arenosus", "strain": "strain=CAU 1517", "accession": "GCA_005771535.1", "taxid": 2576037, "species_taxid": 2576037, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1032, "total_fragments": 1034, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=CECT 7835", "accession": "GCA_004116675.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 80.4733, "matched_fragments": 500, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 80.3975, "matched_fragments": 510, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter pacificus", "strain": "strain=CGMCC 1.11011", "accession": "GCA_014636355.1", "taxid": 1080223, "species_taxid": 1080223, "relation_to_type": "type", "validated": true, "ani": 80.3313, "matched_fragments": 411, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter pacificus", "strain": "strain=LMG 26638", "accession": "GCA_004214795.1", "taxid": 1080223, "species_taxid": 1080223, "relation_to_type": "type", "validated": true, "ani": 80.2257, "matched_fragments": 422, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=CECT 8441", "accession": "GCA_004116565.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 80.105, "matched_fragments": 509, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=LMG 27922", "accession": "GCA_013201825.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 80.0653, "matched_fragments": 522, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=CECT 7837", "accession": "GCA_004115815.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 79.3807, "matched_fragments": 429, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=LMG 26155", "accession": "GCA_003544915.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 79.3498, "matched_fragments": 429, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=CECT 7697", "accession": "GCA_004115775.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 79.258, "matched_fragments": 401, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=CECT 7696", "accession": "GCA_003544935.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.2308, "matched_fragments": 409, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT 7833", "accession": "GCA_003544815.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 79.0725, "matched_fragments": 384, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT7833", "accession": "GCA_004023465.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 79.0169, "matched_fragments": 389, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_006459125.1", "taxid": 877500, "species_taxid": 877500, "relation_to_type": "type", "validated": true, "ani": 78.9163, "matched_fragments": 446, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Poseidonibacter lekithochrous", "strain": "strain=DSM 100870", "accession": "GCA_013283835.1", "taxid": 1904463, "species_taxid": 1904463, "relation_to_type": "type", "validated": true, "ani": 78.912, "matched_fragments": 415, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_004116345.1", "taxid": 877500, "species_taxid": 877500, "relation_to_type": "type", "validated": true, "ani": 78.9082, "matched_fragments": 446, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Poseidonibacter lekithochrous", "strain": "strain=LFT 1.7", "accession": "GCA_001878855.1", "taxid": 1904463, "species_taxid": 1904463, "relation_to_type": "type", "validated": true, "ani": 78.8282, "matched_fragments": 412, "total_fragments": 1034, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005771535.1", "gtdb_species": "s__Halarcobacter arenosus", "ani": 100.0, "matched_fragments": 1032, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_004118855.1", "gtdb_species": "s__Halarcobacter sp004118855", "ani": 80.8947, "matched_fragments": 505, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013373175.1", "gtdb_species": "s__Halarcobacter sp013373175", "ani": 80.583, "matched_fragments": 480, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004116455.1", "gtdb_species": "s__Halarcobacter sp004116455", "ani": 80.5271, "matched_fragments": 467, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.86", "min_intra_species_ani": "96.86", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001895145.1", "gtdb_species": "s__Halarcobacter sp001895145", "ani": 80.5262, "matched_fragments": 545, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003252105.1", "gtdb_species": "s__Halarcobacter sp003252105", "ani": 80.4384, "matched_fragments": 476, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003346815.1", "gtdb_species": "s__Halarcobacter bivalviorum", "ani": 80.3938, "matched_fragments": 510, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004116625.1", "gtdb_species": "s__Halarcobacter mediterraneus", "ani": 80.2157, "matched_fragments": 496, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002869565.1", "gtdb_species": "s__Halarcobacter sp002869565", "ani": 80.2111, "matched_fragments": 584, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013201825.1", "gtdb_species": "s__Halarcobacter ebronensis", "ani": 80.0623, "matched_fragments": 523, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "96.51", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009208075.1", "gtdb_species": "s__Poseidonibacter sp009208075", "ani": 79.2351, "matched_fragments": 409, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003544815.1", "gtdb_species": "s__Aliarcobacter suis", "ani": 79.0495, "matched_fragments": 386, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013283835.1", "gtdb_species": "s__Poseidonibacter lekithochrous", "ani": 78.9193, "matched_fragments": 413, "total_fragments": 1034, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.531, "cell_length": 0.145, "doubling_h": 0.086, "growth_tmp": 30.545, "optimum_tmp": 28.45, "optimum_ph": 7.25, "genome_size": 2607833.553, "gc_content": 27.345, "coding_genes": 2595.468, "rRNA16S_genes": 4.5, "tRNA_genes": 56.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.916, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.062, "aerobic_respiration": 0.937, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.222, "spiral_cell_shape": 0.111 }, "_genome_taxon": [ "Arcobacter", "arenosus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }