{ "type": "genome", "identifier": "GCF_005771565.1", "organism": "Nesterenkonia sphaerica", "title": "Nesterenkonia sphaerica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005771565.1", "bioproject": "PRJNA224116", "biosample": "SAMN11634135", "wgs_master": "VAWA00000000.1", "refseq_category": "reference genome", "taxid": "1804988", "species_taxid": "1804988", "organism_name": "Nesterenkonia sphaerica", "infraspecific_name": "strain=GY239", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/23", "asm_name": "ASM577156v1", "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_005771565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/771/565/GCF_005771565.1_ASM577156v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2791466", "genome_size_ungapped": "2791206", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "89", "contig_count": "89", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005771565.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "2633", "protein_coding_gene_count": "2533", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-23", "dateModified": "2019-05-23", "datePublished": "2019-05-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Nesterenkonia sphaerica" ], "sample_taxid": [ "1804988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean" ], "sample_host_location_id": [], "data_size": "0.783 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2791466", "Number of Sequences": "89", "Longest Sequences (bp)": "316708", "N50 (bp)": "168292", "Gap Ratio (%)": "0.010389", "GCcontent (%)": "64.2", "Number of CDSs": "2604", "Average Protein Length": "322.6", "Coding Ratio (%)": "90.3", "Number of rRNAs": "4", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nesterenkonia sphaerica", "strain": "strain=GY239", "accession": "GCA_005771565.1", "taxid": 1804988, "species_taxid": 1804988, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 897, "total_fragments": 898, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nesterenkonia natronophila", "strain": "strain=M8", "accession": "GCA_003595215.1", "taxid": 2174932, "species_taxid": 2174932, "relation_to_type": "type", "validated": true, "ani": 81.2406, "matched_fragments": 545, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia salmonea", "strain": "strain=GY074", "accession": "GCA_005771525.1", "taxid": 1804987, "species_taxid": 1804987, "relation_to_type": "type", "validated": true, "ani": 80.1954, "matched_fragments": 433, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=CGMCC 1.12781", "accession": "GCA_014639295.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 80.0843, "matched_fragments": 416, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=F10", "accession": "GCA_009758175.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 80.0779, "matched_fragments": 397, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia haasae", "strain": "strain=Hz 6-5", "accession": "GCA_010119385.1", "taxid": 2587813, "species_taxid": 2587813, "relation_to_type": "type", "validated": true, "ani": 79.7494, "matched_fragments": 406, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia muleiensis", "strain": "strain=RB2", "accession": "GCA_003600155.1", "taxid": 2282648, "species_taxid": 2282648, "relation_to_type": "type", "validated": true, "ani": 79.3706, "matched_fragments": 395, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia ebinurensis", "strain": "strain=MD2", "accession": "GCA_008711175.1", "taxid": 2608252, "species_taxid": 2608252, "relation_to_type": "type", "validated": true, "ani": 79.3431, "matched_fragments": 385, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia cremea", "strain": "strain=CGMCC 1.15388", "accession": "GCA_014642675.1", "taxid": 1882340, "species_taxid": 1882340, "relation_to_type": "type", "validated": true, "ani": 78.4331, "matched_fragments": 313, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia pannonica", "strain": "strain=DSM 29786", "accession": "GCA_019575955.1", "taxid": 1548602, "species_taxid": 1548602, "relation_to_type": "type", "validated": true, "ani": 77.5258, "matched_fragments": 217, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter pullicola", "strain": "strain=Sa2BUA2", "accession": "GCA_014836875.1", "taxid": 2762224, "species_taxid": 2762224, "relation_to_type": "type", "validated": true, "ani": 76.7362, "matched_fragments": 104, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter wenxiniae", "strain": "strain=AETb3-4", "accession": "GCA_013376105.1", "taxid": 2713570, "species_taxid": 2713570, "relation_to_type": "type", "validated": true, "ani": 76.5375, "matched_fragments": 109, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus kebangsaanensis", "strain": "strain=P2D13-UKM", "accession": "GCA_008919445.1", "taxid": 2602069, "species_taxid": 2602069, "relation_to_type": "type", "validated": true, "ani": 76.3146, "matched_fragments": 89, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux moechotypicola", "strain": "strain=KCTC 19653", "accession": "GCA_024979255.1", "taxid": 637393, "species_taxid": 637393, "relation_to_type": "type", "validated": true, "ani": 76.2548, "matched_fragments": 74, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=aurantiaca", "accession": "GCA_013389765.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 75.9855, "matched_fragments": 79, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=DSM 43815", "accession": "GCA_014205165.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 75.9848, "matched_fragments": 79, "total_fragments": 898, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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79.3431, "matched_fragments": 385, "total_fragments": 898, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003003175.1", "gtdb_species": "s__Nesterenkonia sandarakina_A", "ani": 78.576, "matched_fragments": 289, "total_fragments": 898, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Nesterenkonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014642675.1", "gtdb_species": "s__Nesterenkonia cremea", "ani": 78.4214, "matched_fragments": 314, 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