{
    "type": "genome",
    "identifier": "GCF_005771675.1",
    "organism": "Hymenobacter jeollabukensis",
    "title": "Hymenobacter jeollabukensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Huazhong Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005771675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11602172",
        "wgs_master": "VAJM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2025313",
        "species_taxid": "2025313",
        "organism_name": "Hymenobacter jeollabukensis",
        "infraspecific_name": "strain=1-3-3-8",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/23",
        "asm_name": "ASM577167v1",
        "asm_submitter": "Huazhong Agricultural University",
        "gbrs_paired_asm": "GCA_005771675.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/771/675/GCF_005771675.1_ASM577167v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6177743",
        "genome_size_ungapped": "6177743",
        "gc_percent": "64.500000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_005771675.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "5279",
        "protein_coding_gene_count": "5211",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-23",
    "dateModified": "2019-05-23",
    "datePublished": "2019-05-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Hymenobacter jeollabukensis"
        ],
        "sample_taxid": [
            "2025313"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Jeollabuk-do"
        ],
        "sample_host_location_id": [],
        "data_size": "1.704 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6177743",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "995904",
        "N50 (bp)": "377338",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.4",
        "Number of CDSs": "5246",
        "Average Protein Length": "338.5",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Hymenobacter jeollabukensis",
                "strain": "strain=1-3-3-8",
                "accession": "GCA_005771675.1",
                "taxid": 2025313,
                "species_taxid": 2025313,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2044,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Hymenobacter edaphi",
                "strain": "strain=NL",
                "accession": "GCA_003258365.1",
                "taxid": 2211146,
                "species_taxid": 2211146,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.1358,
                "matched_fragments": 1685,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter gummosus",
                "strain": "strain=KCTC 52166",
                "accession": "GCA_003970915.1",
                "taxid": 1776032,
                "species_taxid": 1776032,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3423,
                "matched_fragments": 1566,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter busanensis",
                "strain": "strain=MA3",
                "accession": "GCA_008727865.1",
                "taxid": 2607656,
                "species_taxid": 2607656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1354,
                "matched_fragments": 1215,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter oligotrophus",
                "strain": "strain=sh-6",
                "accession": "GCA_003574965.1",
                "taxid": 2319843,
                "species_taxid": 2319843,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4001,
                "matched_fragments": 931,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter persicinus",
                "strain": "strain=1-3-3-3",
                "accession": "GCA_004167665.1",
                "taxid": 2025506,
                "species_taxid": 2025506,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8873,
                "matched_fragments": 976,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter piscis",
                "strain": "strain=NST-14",
                "accession": "GCA_018760735.1",
                "taxid": 2839984,
                "species_taxid": 2839984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.539,
                "matched_fragments": 968,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter guriensis",
                "strain": "strain=BT594",
                "accession": "GCA_015773195.1",
                "taxid": 2793065,
                "species_taxid": 2793065,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1982,
                "matched_fragments": 920,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter armeniacus",
                "strain": "strain=BT189",
                "accession": "GCA_014699055.1",
                "taxid": 2771358,
                "species_taxid": 2771358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8949,
                "matched_fragments": 963,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter metallicola",
                "strain": "strain=9PBR-1",
                "accession": "GCA_004745645.1",
                "taxid": 2563114,
                "species_taxid": 2563114,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8021,
                "matched_fragments": 920,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter glacialis",
                "strain": "strain=CCM 8648",
                "accession": "GCA_001816165.1",
                "taxid": 1908236,
                "species_taxid": 1908236,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1334,
                "matched_fragments": 670,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter terricola",
                "strain": "strain=3F2",
                "accession": "GCA_017921975.2",
                "taxid": 2819236,
                "species_taxid": 2819236,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9817,
                "matched_fragments": 902,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter montanus",
                "strain": "strain=BT664",
                "accession": "GCA_014699115.1",
                "taxid": 2771359,
                "species_taxid": 2771359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6122,
                "matched_fragments": 642,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinokineospora bangkokensis",
                "strain": "strain=44EHW",
                "accession": "GCA_001940455.1",
                "taxid": 1193682,
                "species_taxid": 1193682,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7349,
                "matched_fragments": 225,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis anabasis",
                "strain": "strain=EGI 650086",
                "accession": "GCA_009765355.1",
                "taxid": 1840409,
                "species_taxid": 1840409,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6567,
                "matched_fragments": 171,
                "total_fragments": 2046,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_005771675.1",
                "gtdb_species": "s__Solirubrum jeollabukense",
                "ani": 100.0,
                "matched_fragments": 2044,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Solirubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003258365.1",
                "gtdb_species": "s__Solirubrum edaphi",
                "ani": 92.153,
                "matched_fragments": 1683,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Solirubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003970915.1",
                "gtdb_species": "s__Solirubrum gummosum",
                "ani": 87.3705,
                "matched_fragments": 1562,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Solirubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002007105.1",
                "gtdb_species": "s__Solirubrum sp002007105",
                "ani": 85.6721,
                "matched_fragments": 1425,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Solirubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008727865.1",
                "gtdb_species": "s__Solirubrum busanensis",
                "ani": 83.164,
                "matched_fragments": 1211,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Solirubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003574965.1",
                "gtdb_species": "s__Solirubrum oligotrophum",
                "ani": 81.4027,
                "matched_fragments": 931,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Solirubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001483135.1",
                "gtdb_species": "s__Solirubrum puertoriconensis",
                "ani": 80.7461,
                "matched_fragments": 947,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Solirubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003583925.1",
                "gtdb_species": "s__Hymenobacter rubripertinctus",
                "ani": 79.8336,
                "matched_fragments": 890,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014333525.1",
                "gtdb_species": "s__Hymenobacter sp014333525",
                "ani": 79.8156,
                "matched_fragments": 864,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013294115.1",
                "gtdb_species": "s__Hymenobacter caeli",
                "ani": 79.4334,
                "matched_fragments": 880,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004745955.1",
                "gtdb_species": "s__Hymenobacter elongatus",
                "ani": 79.2003,
                "matched_fragments": 754,
                "total_fragments": 2046,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.338,
        "doubling_h": null,
        "growth_tmp": 25.583,
        "optimum_tmp": 23.888,
        "optimum_ph": 7.3,
        "genome_size": 5095981.0,
        "gc_content": 60.5,
        "coding_genes": 4057.5,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 43.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Hymenobacter",
        "jeollabukensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}