{ "type": "genome", "identifier": "GCF_005780165.1", "organism": "Phragmitibacter flavus", "title": "Phragmitibacter flavus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Eotvos Lorand University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005780165.1", "bioproject": "PRJNA224116", "biosample": "SAMN11569541", "wgs_master": "VAUV00000000.1", "refseq_category": "reference genome", "taxid": "2576071", "species_taxid": "2576071", "organism_name": "Phragmitibacter flavus", "infraspecific_name": "strain=MG-N-17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/22", "asm_name": "ASM578016v1", "asm_submitter": "Eotvos Lorand University", "gbrs_paired_asm": "GCA_005780165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/780/165/GCF_005780165.1_ASM578016v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5910933", "genome_size_ungapped": "5910933", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005780165.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4869", "protein_coding_gene_count": "4795", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-22", "dateModified": "2019-05-22", "datePublished": "2019-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Phragmitibacter flavus" ], "sample_taxid": [ "2576071" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary: Lake Ferto" ], "sample_host_location_id": [], "data_size": "1.660 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 107.0, "max": 107.0 }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5910933", "Number of Sequences": "44", "Longest Sequences (bp)": "479176", "N50 (bp)": "348255", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.9", "Number of CDSs": "4839", "Average Protein Length": "359.4", "Coding Ratio (%)": "88.3", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phragmitibacter flavus", "strain": "strain=MG-N-17", "accession": "GCA_005780165.1", "taxid": 2576071, "species_taxid": 2576071, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1946, "total_fragments": 1948, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseimicrobium gellanilyticum", "strain": "strain=DSM 25532", "accession": "GCA_003315205.1", "taxid": 748857, "species_taxid": 748857, "relation_to_type": "type", "validated": true, "ani": 76.4973, "matched_fragments": 163, "total_fragments": 1948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter vanneervenii", "strain": "strain=DSM 12252", "accession": "GCA_014203095.1", "taxid": 48466, "species_taxid": 48466, "relation_to_type": "type", "validated": true, "ani": 76.4592, "matched_fragments": 153, "total_fragments": 1948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter debontii", "strain": "strain=ATCC 700200", "accession": "GCA_900167535.1", "taxid": 48467, "species_taxid": 48467, "relation_to_type": "type", "validated": true, "ani": 76.4467, "matched_fragments": 113, "total_fragments": 1948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 76.3972, "matched_fragments": 216, "total_fragments": 1948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter dejongeii", "strain": "strain=DSM 12251", "accession": "GCA_014203045.1", "taxid": 48465, "species_taxid": 48465, "relation_to_type": "type", "validated": true, "ani": 76.3544, "matched_fragments": 91, "total_fragments": 1948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevifollis gellanilyticus", "strain": "strain=NBRC 108608", "accession": "GCA_007992435.1", "taxid": 748831, "species_taxid": 748831, "relation_to_type": "type", "validated": true, "ani": 76.3186, "matched_fragments": 125, "total_fragments": 1948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter fusiformis", 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"coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Phragmitibacter", "flavus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }