{
    "type": "genome",
    "identifier": "GCF_005849285.1",
    "organism": "Luteithermobacter gelatinilyticus",
    "title": "Luteithermobacter gelatinilyticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Institute of Ocean Science & Technology (KIOST)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005849285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11774873",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2582913",
        "species_taxid": "2582913",
        "organism_name": "Luteithermobacter gelatinilyticus",
        "infraspecific_name": "strain=MEBiC09520",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/27",
        "asm_name": "ASM584928v1",
        "asm_submitter": "Korea Institute of Ocean Science & Technology (KIOST)",
        "gbrs_paired_asm": "GCA_005849285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/849/285/GCF_005849285.1_ASM584928v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3145891",
        "genome_size_ungapped": "3145891",
        "gc_percent": "54.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_005849285.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "2825",
        "protein_coding_gene_count": "2744",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-27",
    "dateModified": "2019-05-27",
    "datePublished": "2019-05-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Luteithermobacter gelatinilyticus"
        ],
        "sample_taxid": [
            "2582913"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Incheon"
        ],
        "sample_host_location_id": [],
        "data_size": "0.887 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3145891",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3145891",
        "N50 (bp)": "3145891",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.7",
        "Number of CDSs": "2816",
        "Average Protein Length": "329.5",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Luteithermobacter gelatinilyticus",
                "strain": "strain=MEBiC09520",
                "accession": "GCA_005849285.1",
                "taxid": 2582913,
                "species_taxid": 2582913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1048,
                "total_fragments": 1048,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Emcibacter nanhaiensis",
                "strain": "strain=MCCC 1A06723",
                "accession": "GCA_006385175.1",
                "taxid": 1505037,
                "species_taxid": 1505037,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8927,
                "matched_fragments": 346,
                "total_fragments": 1048,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paremcibacter congregatus",
                "strain": "strain=ZYL",
                "accession": "GCA_002740695.1",
                "taxid": 2043170,
                "species_taxid": 2043170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7428,
                "matched_fragments": 139,
                "total_fragments": 1048,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paremcibacter congregatus",
                "strain": "strain=ZYLT",
                "accession": "GCA_006385135.1",
                "taxid": 2043170,
                "species_taxid": 2043170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6771,
                "matched_fragments": 138,
                "total_fragments": 1048,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordiimonas marina",
                "strain": "strain=A6E486",
                "accession": "GCA_023006325.1",
                "taxid": 2872312,
                "species_taxid": 2872312,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1573,
                "matched_fragments": 52,
                "total_fragments": 1048,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Iodidimonas muriae",
                "strain": "strain=JCM 17843",
                "accession": "GCA_014647255.1",
                "taxid": 261467,
                "species_taxid": 261467,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9071,
                "matched_fragments": 53,
                "total_fragments": 1048,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Iodidimonas gelatinilytica",
                "strain": "strain=Hi-2",
                "accession": "GCA_008579125.1",
                "taxid": 1236966,
                "species_taxid": 1236966,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5737,
                "matched_fragments": 58,
                "total_fragments": 1048,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sneathiella chinensis",
                "strain": "strain=LMG23452",
                "accession": "GCA_012720115.1",
                "taxid": 349750,
                "species_taxid": 349750,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5195,
                "matched_fragments": 53,
                "total_fragments": 1048,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_005849285.1",
                "gtdb_species": "s__Luteithermobacter gelatinilyticus",
                "ani": 100.0,
                "matched_fragments": 1048,
                "total_fragments": 1048,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__Luteithermobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.04",
                "min_intra_species_ani": "99.04",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_006385175.1",
                "gtdb_species": "s__Emcibacter nanhaiensis",
                "ani": 77.9379,
                "matched_fragments": 347,
                "total_fragments": 1048,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__Emcibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006385135.1",
                "gtdb_species": "s__Paremcibacter congregatus",
                "ani": 76.7895,
                "matched_fragments": 138,
                "total_fragments": 1048,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__Paremcibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002749135.1",
                "gtdb_species": "s__Paremcibacter sp002749135",
                "ani": 76.6465,
                "matched_fragments": 106,
                "total_fragments": 1048,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__Paremcibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002401455.1",
                "gtdb_species": "s__Paremcibacter sp002401455",
                "ani": 76.5897,
                "matched_fragments": 91,
                "total_fragments": 1048,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__Paremcibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011051815.1",
                "gtdb_species": "s__Paremcibacter sp011051815",
                "ani": 76.4214,
                "matched_fragments": 68,
                "total_fragments": 1048,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__Paremcibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013152755.1",
                "gtdb_species": "s__Paremcibacter sp013152755",
                "ani": 76.0641,
                "matched_fragments": 113,
                "total_fragments": 1048,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Emcibacteraceae;g__Paremcibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014647255.1",
                "gtdb_species": "s__Iodidimonas muriae",
                "ani": 75.9071,
                "matched_fragments": 53,
                "total_fragments": 1048,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Rhodothalassiaceae;g__Iodidimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.25",
                "min_intra_species_ani": "95.88",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002195995.1",
                "gtdb_species": "s__Inquilinus limosus_C",
                "ani": 75.6414,
                "matched_fragments": 55,
                "total_fragments": 1048,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__DSM-16000;f__Inquilinaceae;g__Inquilinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012720115.1",
                "gtdb_species": "s__Sneathiella chinensis",
                "ani": 75.5195,
                "matched_fragments": 53,
                "total_fragments": 1048,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sneathiellales;f__Sneathiellaceae;g__Sneathiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Luteithermobacter",
        "gelatinilyticus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}