{ "type": "genome", "identifier": "GCF_005863225.1", "organism": "Nocardia cyriacigeorgica", "title": "Nocardia cyriacigeorgica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UMR5557 Laboratoire d'Ecologie Microbienne", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005863225.1", "bioproject": "PRJNA224116", "biosample": "SAMN11640232", "wgs_master": "VBUR00000000.1", "refseq_category": "na", "taxid": "135487", "species_taxid": "135487", "organism_name": "Nocardia cyriacigeorgica", "infraspecific_name": "strain=DSM 44484", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/22", "asm_name": "ASM586322v1", "asm_submitter": "UMR5557 Laboratoire d'Ecologie Microbienne", "gbrs_paired_asm": "GCA_005863225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/863/225/GCF_005863225.1_ASM586322v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6262819", "genome_size_ungapped": "6262819", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005863225.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "5745", "protein_coding_gene_count": "5603", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-22", "dateModified": "2019-05-22", "datePublished": "2019-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia cyriacigeorgica" ], "sample_taxid": [ "135487" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.707 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6262819", "Number of Sequences": "64", "Longest Sequences (bp)": "466572", "N50 (bp)": "185276", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "5724", "Average Protein Length": "322.1", "Coding Ratio (%)": "88.3", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia cyriacigeorgica", "strain": "strain=DSM 44484", "accession": "GCA_005863225.1", "taxid": 135487, "species_taxid": 135487, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2048, 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"organism_name": "Nocardia asteroides", "strain": "strain=DSM 43373", "accession": "GCA_900114685.1", "taxid": 1824, "species_taxid": 1824, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7039, "matched_fragments": 1172, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia asteroides", "strain": "strain=NBRC 15531", "accession": "GCA_000308355.2", "taxid": 1824, "species_taxid": 1824, "relation_to_type": "suspected-type", "validated": true, "ani": 81.6805, "matched_fragments": 1165, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia barduliensis", "strain": "strain=335427", "accession": "GCA_013315795.1", "taxid": 2736643, "species_taxid": 2736643, "relation_to_type": "type", "validated": true, "ani": 81.6726, "matched_fragments": 1181, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia asteroides", "strain": "strain=ATCC 19247", "accession": "GCA_005863255.1", "taxid": 1824, "species_taxid": 1824, "relation_to_type": "suspected-type", "validated": true, "ani": 81.6721, "matched_fragments": 1165, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia neocaledoniensis", "strain": "strain=NBRC 108232", "accession": "GCA_007990735.1", "taxid": 236511, "species_taxid": 236511, "relation_to_type": "type", "validated": true, "ani": 81.5414, "matched_fragments": 1067, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia suismassiliense", "strain": "strain=S-137", "accession": "GCA_900269665.1", "taxid": 2077092, "species_taxid": 2077092, "relation_to_type": "type", "validated": true, "ani": 81.4848, "matched_fragments": 1157, "total_fragments": 2058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia arthritidis", "strain": "strain=NBRC 100137", 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