{
    "type": "genome",
    "identifier": "GCF_005863255.1",
    "organism": "Nocardia asteroides NBRC 15531",
    "title": "Nocardia asteroides NBRC 15531",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UMR5557 Laboratoire d'Ecologie Microbienne",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005863255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11640252",
        "wgs_master": "VBUS00000000.1",
        "refseq_category": "na",
        "taxid": "1110697",
        "species_taxid": "1824",
        "organism_name": "Nocardia asteroides NBRC 15531",
        "infraspecific_name": "strain=ATCC 19247",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/22",
        "asm_name": "ASM586325v1",
        "asm_submitter": "UMR5557 Laboratoire d'Ecologie Microbienne",
        "gbrs_paired_asm": "GCA_005863255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/863/255/GCF_005863255.1_ASM586325v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6691984",
        "genome_size_ungapped": "6691984",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "18",
        "contig_count": "18",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-17",
        "total_gene_count": "6209",
        "protein_coding_gene_count": "6091",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-22",
    "dateModified": "2019-05-22",
    "datePublished": "2019-05-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardia asteroides NBRC 15531"
        ],
        "sample_taxid": [
            "1110697"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "1.794 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.78,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6691984",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "2337970",
        "N50 (bp)": "1514336",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.0",
        "Number of CDSs": "6230",
        "Average Protein Length": "326.3",
        "Coding Ratio (%)": "91.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nocardia asteroides",
                "strain": "strain=ATCC 19247",
                "accession": "GCA_005863255.1",
                "taxid": 1824,
                "species_taxid": 1824,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2221,
                "total_fragments": 2225,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardia asteroides",
                "strain": "strain=NCTC11293",
                "accession": "GCA_900637185.1",
                "taxid": 1824,
                "species_taxid": 1824,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9978,
                "matched_fragments": 2217,
                "total_fragments": 2225,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardia asteroides",
                "strain": "strain=DSM 43373",
                "accession": "GCA_900114685.1",
                "taxid": 1824,
                "species_taxid": 1824,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9957,
                "matched_fragments": 2209,
                "total_fragments": 2225,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardia asteroides",
                "strain": "strain=NBRC 15531",
                "accession": "GCA_000308355.2",
                "taxid": 1824,
                "species_taxid": 1824,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9898,
                "matched_fragments": 2197,
                "total_fragments": 2225,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardia rhizosphaerihabitans",
                "strain": "strain=CGMCC 4.7329",
                "accession": "GCA_014646295.1",
                "taxid": 1691570,
                "species_taxid": 1691570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.7566,
                "matched_fragments": 1763,
                "total_fragments": 2225,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia neocaledoniensis",
                "strain": "strain=NBRC 108232",
                "accession": "GCA_007990735.1",
                "taxid": 236511,
                "species_taxid": 236511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9918,
                "matched_fragments": 1589,
                "total_fragments": 2225,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.78,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900637185.1",
                "gtdb_species": "s__Nocardia asteroides",
                "ani": 99.9978,
                "matched_fragments": 2217,
                "total_fragments": 2225,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014646295.1",
                "gtdb_species": "s__Nocardia rhizosphaerihabitans",
                "ani": 88.7677,
                "matched_fragments": 1761,
                "total_fragments": 2225,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003182135.1",
                "gtdb_species": "s__Nocardia neocaledoniensis",
                "ani": 87.9037,
                "matched_fragments": 1780,
                "total_fragments": 2225,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001886715.1",
                "gtdb_species": "s__Nocardia mangyaensis",
                "ani": 86.0261,
                "matched_fragments": 1530,
                "total_fragments": 2225,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002846365.1",
                "gtdb_species": "s__Nocardia fluminea",
                "ani": 85.5578,
                "matched_fragments": 1651,
                "total_fragments": 2225,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001612805.1",
                "gtdb_species": "s__Nocardia coubleae",
                "ani": 85.452,
                "matched_fragments": 1549,
                "total_fragments": 2225,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 96.9719,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001612825.1",
                "gtdb_species": "s__Nocardia caishijiensis",
                "ani": 85.2596,
                "matched_fragments": 1492,
                "total_fragments": 2225,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013839555.1",
                "gtdb_species": "s__Nocardia sp013839555",
                "ani": 85.1986,
                "matched_fragments": 1199,
                "total_fragments": 2225,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.2705,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000308795.1",
                "gtdb_species": "s__Nocardia thailandica",
                "ani": 84.0108,
                "matched_fragments": 1435,
                "total_fragments": 2225,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011801125.1",
                "gtdb_species": "s__Nocardia brasiliensis_C",
                "ani": 81.6601,
                "matched_fragments": 1210,
                "total_fragments": 2225,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.223,
        "cell_length": 0.046,
        "doubling_h": null,
        "growth_tmp": 28.5,
        "optimum_tmp": 30.75,
        "optimum_ph": 7.496,
        "genome_size": 6955552.667,
        "gc_content": 69.91,
        "coding_genes": 6908.619,
        "rRNA16S_genes": 3.166,
        "tRNA_genes": 53.5,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.098,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.882,
        "coccobacillus_cell_shape": 0.019,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Nocardia",
        "asteroides",
        "NBRC",
        "15531"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}