{ "type": "genome", "identifier": "GCF_005870085.1", "organism": "Aquibacillus sediminis", "title": "Aquibacillus sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbial Ecology and Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005870085.1", "bioproject": "PRJNA224116", "biosample": "SAMN11518981", "wgs_master": "SZNM00000000.1", "refseq_category": "reference genome", "taxid": "2574734", "species_taxid": "2574734", "organism_name": "Aquibacillus sediminis", "infraspecific_name": "strain=BH258", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/28", "asm_name": "ASM587008v1", "asm_submitter": "Institute of Microbial Ecology and Resources", "gbrs_paired_asm": "GCA_005870085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/870/085/GCF_005870085.1_ASM587008v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4381979", "genome_size_ungapped": "4381979", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005870085.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4315", "protein_coding_gene_count": "4048", "non_coding_gene_count": "211", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-28", "dateModified": "2019-05-28", "datePublished": "2019-05-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquibacillus sediminis" ], "sample_taxid": [ "2574734" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Chonnam, Shinan, Bigeum Island" ], "sample_host_location_id": [], "data_size": "1.242 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 28.0, "max": 28.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4381979", "Number of Sequences": "85", "Longest Sequences (bp)": "380972", "N50 (bp)": "135569", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.4", "Number of CDSs": "4182", "Average Protein Length": "278.4", "Coding Ratio (%)": "79.7", "Number of rRNAs": "15", "Number of tRNAs": "153", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquibacillus sediminis", "strain": "strain=BH258", "accession": "GCA_005870085.1", "taxid": 2574734, 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"status": "below_threshold" }, { "organism_name": "Gracilibacillus dipsosauri", "strain": "strain=DD1", "accession": "GCA_003176895.1", "taxid": 178340, "species_taxid": 178340, "relation_to_type": "type", "validated": true, "ani": 77.0142, "matched_fragments": 91, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus ryukyuensis", "strain": "strain=DSM 15140", "accession": "GCA_003315295.1", "taxid": 200904, "species_taxid": 200904, "relation_to_type": "type", "validated": true, "ani": 77.0102, "matched_fragments": 129, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutcliffiella halmapala", "strain": "strain=DSM 8723", "accession": "GCA_002019665.1", "taxid": 79882, "species_taxid": 79882, "relation_to_type": "type", "validated": true, "ani": 76.9953, "matched_fragments": 58, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacillus massiliensis", "strain": "strain=Marseille-P3554", "accession": "GCA_900166625.1", "taxid": 1926286, "species_taxid": 1926286, "relation_to_type": "type", "validated": true, "ani": 76.9595, "matched_fragments": 64, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus oryzae", "strain": "strain=TD8", "accession": "GCA_009498735.1", "taxid": 1672701, "species_taxid": 1672701, "relation_to_type": "type", "validated": true, "ani": 76.9264, "matched_fragments": 106, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saliterribacillus persicus", "strain": "strain=DSM 27696", "accession": "GCA_003337485.1", "taxid": 930114, "species_taxid": 930114, "relation_to_type": "type", "validated": true, "ani": 76.9231, "matched_fragments": 118, "total_fragments": 1426, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus iheyensis", "strain": 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