{ "type": "genome", "identifier": "GCF_005871095.1", "organism": "Marinobacter shengliensis subsp. alexandrii", "title": "Marinobacter shengliensis subsp. alexandrii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005871095.1", "bioproject": "PRJNA224116", "biosample": "SAMN11445130", "wgs_master": "SWKL00000000.1", "refseq_category": "na", "taxid": "2570350", "species_taxid": "1389223", "organism_name": "Marinobacter shengliensis subsp. alexandrii", "infraspecific_name": "strain=LZ-6", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/28", "asm_name": "ASM587109v1", "asm_submitter": "Zhejiang Ocean University", "gbrs_paired_asm": "GCA_005871095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/871/095/GCF_005871095.1_ASM587109v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4652078", "genome_size_ungapped": "4651899", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005871095.1-RS_2025_01_02", "annotation_date": "2025-01-02", "total_gene_count": "4360", "protein_coding_gene_count": "4268", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-28", "dateModified": "2019-05-28", "datePublished": "2019-05-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter shengliensis subsp. alexandrii" ], "sample_taxid": [ "2570350" ], "sample_host_organism": [ "Alexandrium minutum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:East China Sea" ], "sample_host_location_id": [], "data_size": "1.322 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4652078", "Number of Sequences": "55", "Longest Sequences (bp)": "681939", "N50 (bp)": "312274", "Gap Ratio (%)": "0.003869", "GCcontent (%)": "57.0", "Number of CDSs": "4318", "Average Protein Length": "323.8", "Coding Ratio (%)": "90.2", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1523, "total_fragments": 1524, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 96.602, "matched_fragments": 1200, "total_fragments": 1524, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 83.6612, "matched_fragments": 783, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=CGMCC 1.12481", "accession": "GCA_014637865.1", "taxid": 1323740, "species_taxid": 1323740, 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80.8887, "matched_fragments": 615, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 80.4387, "matched_fragments": 627, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 80.0758, "matched_fragments": 585, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 79.9973, "matched_fragments": 631, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 79.7884, "matched_fragments": 558, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 79.7792, "matched_fragments": 587, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter alexandrii", "strain": "strain=LZ-8", "accession": "GCA_005871205.1", "taxid": 2570351, "species_taxid": 2570351, "relation_to_type": "type", "validated": true, "ani": 79.7572, "matched_fragments": 527, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter sediminum", "strain": "strain=R65", "accession": "GCA_016820575.1", "taxid": 256323, "species_taxid": 256323, "relation_to_type": "type", "validated": true, "ani": 79.4861, "matched_fragments": 512, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 79.4046, "matched_fragments": 395, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nitratireducens", "strain": "strain=AK21", "accession": "GCA_000708045.1", "taxid": 1137280, "species_taxid": 1137280, "relation_to_type": "type", "validated": true, "ani": 79.1509, "matched_fragments": 527, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 78.6538, "matched_fragments": 457, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halodurans", "strain": "strain=YJ-S3-2", "accession": "GCA_004327985.1", "taxid": 2528979, "species_taxid": 2528979, "relation_to_type": "type", "validated": true, "ani": 78.2374, "matched_fragments": 374, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter caseinilyticus", "strain": "strain=M3-13", "accession": "GCA_011074955.1", "taxid": 2692195, "species_taxid": 2692195, "relation_to_type": "type", "validated": true, "ani": 77.8944, "matched_fragments": 266, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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