{ "type": "genome", "identifier": "GCF_005871115.1", "organism": "Maritimibacter alexandrii", "title": "Maritimibacter alexandrii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005871115.1", "bioproject": "PRJNA224116", "biosample": "SAMN11445135", "wgs_master": "SWKQ00000000.1", "refseq_category": "reference genome", "taxid": "2570355", "species_taxid": "2570355", "organism_name": "Maritimibacter alexandrii", "infraspecific_name": "strain=LZ-17", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/28", "asm_name": "ASM587111v1", "asm_submitter": "Zhejiang Ocean University", "gbrs_paired_asm": "GCA_005871115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/871/115/GCF_005871115.1_ASM587111v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4307064", "genome_size_ungapped": "4306979", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005871115.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4308", "protein_coding_gene_count": "4234", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-28", "dateModified": "2019-05-28", "datePublished": "2019-05-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Maritimibacter alexandrii" ], "sample_taxid": [ "2570355" ], "sample_host_organism": [ "Alexandrium minutum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:East China Sea" ], "sample_host_location_id": [], "data_size": "1.188 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4307064", "Number of Sequences": "20", "Longest Sequences (bp)": "1500592", "N50 (bp)": "937164", "Gap Ratio (%)": "0.002136", "GCcontent (%)": "64.3", "Number of CDSs": "4264", "Average Protein Length": "307.2", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maritimibacter alexandrii", "strain": "strain=LZ-17", "accession": "GCA_005871115.1", "taxid": 2570355, "species_taxid": 2570355, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1427, "total_fragments": 1428, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Maritimibacter alkaliphilus", "strain": "strain=HTCC2654", "accession": "GCA_008124775.1", "taxid": 404236, "species_taxid": 404236, "relation_to_type": "type", "validated": true, "ani": 96.9703, "matched_fragments": 1279, "total_fragments": 1428, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Maritimibacter alkaliphilus", "strain": "strain=HTCC2654", "accession": "GCA_000152805.1", "taxid": 404236, "species_taxid": 404236, "relation_to_type": "type", "validated": true, "ani": 96.9324, "matched_fragments": 1288, "total_fragments": 1428, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Maritimibacter harenae", "strain": "strain=DP07", "accession": "GCA_009882975.1", "taxid": 2606218, "species_taxid": 2606218, "relation_to_type": "type", "validated": true, "ani": 82.3212, "matched_fragments": 897, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger thiooxidans", "strain": "strain=DSM 10146", "accession": "GCA_900102075.1", "taxid": 282683, "species_taxid": 282683, "relation_to_type": "type", "validated": true, "ani": 78.521, "matched_fragments": 501, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_000819565.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 78.0891, "matched_fragments": 408, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0526, "matched_fragments": 442, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=DSM 26894", "accession": "GCA_900116195.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9352, "matched_fragments": 448, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.9156, "matched_fragments": 356, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.8377, "matched_fragments": 414, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.8258, "matched_fragments": 375, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella sediminis", "strain": "strain=DP3N28-2", "accession": "GCA_019218285.1", "taxid": 2836866, "species_taxid": 2836866, "relation_to_type": "type", "validated": true, "ani": 77.7047, "matched_fragments": 358, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus ximenensis", "strain": "strain=T1lg56", "accession": "GCA_003056725.1", "taxid": 1911570, "species_taxid": 1911570, "relation_to_type": "type", "validated": true, "ani": 77.5614, "matched_fragments": 357, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 77.4395, "matched_fragments": 336, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus siganidrum", "strain": "strain=M26", "accession": "GCA_003709565.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 77.3433, "matched_fragments": 348, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus siganidrum", "strain": "strain=DSM 26381", "accession": "GCA_003594835.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 77.3012, "matched_fragments": 335, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000152805.1", "gtdb_species": 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