{ "type": "genome", "identifier": "GCF_005871165.1", "organism": "Maricaulis alexandrii", "title": "Maricaulis alexandrii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005871165.1", "bioproject": "PRJNA224116", "biosample": "SAMN11445134", "wgs_master": "SWKP00000000.1", "refseq_category": "reference genome", "taxid": "2570354", "species_taxid": "2570354", "organism_name": "Maricaulis alexandrii", "infraspecific_name": "strain=LZ-16-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/28", "asm_name": "ASM587116v1", "asm_submitter": "Zhejiang Ocean University", "gbrs_paired_asm": "GCA_005871165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/871/165/GCF_005871165.1_ASM587116v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3348699", "genome_size_ungapped": "3348699", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005871165.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3230", "protein_coding_gene_count": "3163", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-28", "dateModified": "2019-05-28", "datePublished": "2019-05-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Maricaulis alexandrii" ], "sample_taxid": [ "2570354" ], "sample_host_organism": [ "Alexandrium minutum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:East China Sea" ], "sample_host_location_id": [], "data_size": "0.928 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3348699", "Number of Sequences": "12", "Longest Sequences (bp)": "670462", "N50 (bp)": "558629", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "3196", "Average Protein Length": "317.3", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maricaulis alexandrii", "strain": "strain=LZ-16-1", "accession": "GCA_005871165.1", "taxid": 2570354, "species_taxid": 2570354, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1110, "total_fragments": 1110, 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"strain=6B-8", "accession": "GCA_004000605.1", "taxid": 1434191, "species_taxid": 1434191, "relation_to_type": "type", "validated": true, "ani": 77.4927, "matched_fragments": 212, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Martelella endophytica", "strain": "strain=YC6887", "accession": "GCA_000960975.1", "taxid": 1486262, "species_taxid": 1486262, "relation_to_type": "type", "validated": true, "ani": 76.8129, "matched_fragments": 81, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 76.8091, "matched_fragments": 128, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium australicum", "strain": "strain=WSM2073", "accession": "GCA_000230995.3", 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