{ "type": "genome", "identifier": "GCF_005876855.1", "organism": "Stutzerimonas nosocomialis", "title": "Stutzerimonas nosocomialis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Balearic Islands", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005876855.1", "bioproject": "PRJNA224116", "biosample": "SAMN09398993", "wgs_master": "QLAE00000000.1", "refseq_category": "reference genome", "taxid": "1056496", "species_taxid": "1056496", "organism_name": "Stutzerimonas nosocomialis", "infraspecific_name": "strain=A31/70", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/28", "asm_name": "ASM587685v1", "asm_submitter": "University of Balearic Islands", "gbrs_paired_asm": "GCA_005876855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/876/855/GCF_005876855.1_ASM587685v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4755882", "genome_size_ungapped": "4755882", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "86", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005876855.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "4497", "protein_coding_gene_count": "4375", "non_coding_gene_count": "56", "pubmed_id": "31373894;27744605" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-28", "dateModified": "2019-05-28", "datePublished": "2019-05-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Stutzerimonas nosocomialis" ], "sample_taxid": [ "1056496" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "1.313 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4755882", "Number of Sequences": "86", "Longest Sequences (bp)": "269417", "N50 (bp)": "107156", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.5", "Number of CDSs": "4398", "Average Protein Length": "320.2", "Coding Ratio (%)": "88.8", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "[Pseudomonas] nosocomialis", "strain": "strain=A31/70", "accession": "GCA_005876855.1", "taxid": 1056496, "species_taxid": 1056496, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=CGMCC 1.1803", "accession": "GCA_000219605.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 82.6788, "matched_fragments": 946, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 82.4213, "matched_fragments": 795, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas carbonaria", "strain": "strain=CIP 111764", "accession": "GCA_904061905.1", "taxid": 2762745, "species_taxid": 2762745, "relation_to_type": "type", "validated": true, "ani": 82.101, "matched_fragments": 812, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 81.7794, "matched_fragments": 774, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NBRC 14159", "accession": "GCA_000467105.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 81.7668, "matched_fragments": 764, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kuykendallii", "strain": "strain=NRRL B-59562", "accession": "GCA_900106975.1", "taxid": 1007099, "species_taxid": 1007099, "relation_to_type": "type", "validated": true, "ani": 81.7612, "matched_fragments": 784, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 81.618, "matched_fragments": 617, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] urumqiensis", "strain": "strain=T3", "accession": "GCA_003640395.1", "taxid": 638269, "species_taxid": 638269, "relation_to_type": "type", "validated": true, "ani": 81.5989, "matched_fragments": 865, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 81.397, "matched_fragments": 773, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 81.3745, "matched_fragments": 725, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 81.3615, "matched_fragments": 729, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter beijerinckii", "strain": "strain=DSM 378", "accession": "GCA_900110885.1", "taxid": 170623, "species_taxid": 170623, "relation_to_type": "type", "validated": true, "ani": 81.2108, "matched_fragments": 624, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangrovi", "strain": "strain=TC11", "accession": "GCA_003052585.1", "taxid": 2161748, "species_taxid": 2161748, "relation_to_type": "type", 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"below_threshold" }, { "organism_name": "Marinobacter bohaiensis", "strain": "strain=T17", "accession": "GCA_003258515.1", "taxid": 2201898, "species_taxid": 2201898, "relation_to_type": "type", "validated": true, "ani": 77.2434, "matched_fragments": 280, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nanhaiticus", "strain": "strain=D15-8W", "accession": "GCA_000364845.1", "taxid": 1305740, "species_taxid": 1305740, "relation_to_type": "type", "validated": true, "ani": 76.5486, "matched_fragments": 138, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 76.1899, "matched_fragments": 213, "total_fragments": 1544, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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