{ "type": "genome", "identifier": "GCF_005877905.1", "organism": "Pseudomonas nicosulfuronedens", "title": "Pseudomonas nicosulfuronedens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005877905.1", "bioproject": "PRJNA224116", "biosample": "SAMN11465145", "wgs_master": "SWDV00000000.1", "refseq_category": "reference genome", "taxid": "2571105", "species_taxid": "2571105", "organism_name": "Pseudomonas nicosulfuronedens", "infraspecific_name": "strain=LAM1902", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/28", "asm_name": "ASM587790v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_005877905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/877/905/GCF_005877905.1_ASM587790v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6677205", "genome_size_ungapped": "6677205", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "141", "contig_count": "141", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005877905.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "6190", "protein_coding_gene_count": "6084", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-28", "dateModified": "2019-05-28", "datePublished": "2019-05-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas nicosulfuronedens" ], "sample_taxid": [ "2571105" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Puyang" ], "sample_host_location_id": [], "data_size": "1.844 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6677205", "Number of Sequences": "141", "Longest Sequences (bp)": "413245", "N50 (bp)": "164941", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.8", "Number of CDSs": "6067", "Average Protein Length": "323.3", "Coding Ratio (%)": "88.1", "Number of rRNAs": "4", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas nicosulfuronedens", "strain": "strain=LAM1902", "accession": "GCA_005877905.1", "taxid": 2571105, "species_taxid": 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"type", "validated": true, "ani": 86.2804, "matched_fragments": 1520, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=LMG 18378", "accession": "GCA_900112375.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 86.2698, "matched_fragments": 1550, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=CCM 7361", "accession": "GCA_900099945.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 86.2485, "matched_fragments": 1508, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=RLD-1", "accession": "GCA_900187975.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 86.1849, "matched_fragments": 1521, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas knackmussii", "strain": "strain=B13", "accession": "GCA_000689415.1", "taxid": 65741, "species_taxid": 65741, "relation_to_type": "type", "validated": true, "ani": 85.6912, "matched_fragments": 1418, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=NBRC 103047", "accession": "GCA_002091655.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, "ani": 85.429, "matched_fragments": 1230, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=JCM 21621", "accession": "GCA_900103845.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, "ani": 85.4009, "matched_fragments": 1238, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 82.1512, "matched_fragments": 913, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 82.1074, "matched_fragments": 1050, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 81.9726, "matched_fragments": 1011, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 81.8101, "matched_fragments": 982, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 81.3087, "matched_fragments": 932, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005877905.1", "gtdb_species": "s__Pseudomonas nicosulfuronedens", "ani": 100.0, "matched_fragments": 2148, "total_fragments": 2156, "gtdb_taxonomy": 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