{ "type": "genome", "identifier": "GCF_005885605.1", "organism": "Colwellia ponticola", "title": "Colwellia ponticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005885605.1", "bioproject": "PRJNA224116", "biosample": "SAMN11534590", "wgs_master": "SZVP00000000.1", "refseq_category": "reference genome", "taxid": "2304625", "species_taxid": "2304625", "organism_name": "Colwellia ponticola", "infraspecific_name": "strain=OISW-25", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/29", "asm_name": "ASM588560v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_005885605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/885/605/GCF_005885605.1_ASM588560v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3722219", "genome_size_ungapped": "3722219", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "239", "contig_count": "239", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005885605.1-RS_2024_08_22", "annotation_date": "2024-08-22", "total_gene_count": "3278", "protein_coding_gene_count": "3135", "non_coding_gene_count": "94", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-29", "dateModified": "2019-05-29", "datePublished": "2019-05-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Colwellia ponticola" ], "sample_taxid": [ "2304625" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Oido" ], "sample_host_location_id": [], "data_size": "1.054 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3722219", "Number of Sequences": "239", "Longest Sequences (bp)": "714677", "N50 (bp)": "225530", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.7", "Number of CDSs": "3097", "Average Protein Length": "333.9", "Coding Ratio (%)": "83.3", "Number of rRNAs": "7", "Number of tRNAs": "82", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Colwellia ponticola", "strain": "strain=OISW-25", "accession": "GCA_005885605.1", "taxid": 2304625, "species_taxid": 2304625, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1191, "total_fragments": 1191, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Colwellia demingiae", "strain": "strain=ACAM 459", "accession": "GCA_007954275.1", "taxid": 89401, "species_taxid": 89401, "relation_to_type": "type", "validated": true, "ani": 80.8981, "matched_fragments": 698, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia piezophila", "strain": "strain=ATCC BAA-637", "accession": "GCA_000378625.1", "taxid": 211668, "species_taxid": 211668, "relation_to_type": "type", "validated": true, "ani": 79.9799, "matched_fragments": 553, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia echini", "strain": "strain=A3", "accession": "GCA_002843355.2", "taxid": 1982103, "species_taxid": 1982103, "relation_to_type": "type", "validated": true, "ani": 79.9418, "matched_fragments": 459, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia marinimaniae", "strain": "strain=MTCD1", "accession": "GCA_002207865.1", "taxid": 1513592, "species_taxid": 1513592, "relation_to_type": "type", "validated": true, "ani": 79.6818, "matched_fragments": 574, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognaticolwellia mytili", "strain": "strain=KCTC 52417", "accession": "GCA_002104475.1", "taxid": 1888913, "species_taxid": 1888913, "relation_to_type": "type", "validated": true, "ani": 78.3026, "matched_fragments": 254, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 76.735, "matched_fragments": 87, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella vesiculosa", "strain": "strain=M7", "accession": "GCA_021560015.1", "taxid": 518738, "species_taxid": 518738, "relation_to_type": "type", "validated": true, "ani": 76.3085, "matched_fragments": 67, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliivibrio fischeri", "strain": "strain=DSM 507", "accession": "GCA_023983475.1", "taxid": 668, "species_taxid": 668, "relation_to_type": "suspected-type", "validated": true, "ani": 76.2675, "matched_fragments": 58, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 42807", "accession": "GCA_023283595.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 75.8718, "matched_fragments": 67, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005885605.1", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Colwellia", "ponticola" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }