{ "type": "genome", "identifier": "GCF_005885635.1", "organism": "Maribacter algarum", "title": "Maribacter algarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005885635.1", "bioproject": "PRJNA224116", "biosample": "SAMN11625834", "wgs_master": "VATY00000000.1", "refseq_category": "reference genome", "taxid": "2578118", "species_taxid": "2578118", "organism_name": "Maribacter algarum", "infraspecific_name": "strain=RZ26", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/29", "asm_name": "ASM588563v1", "asm_submitter": "Shandong university", "gbrs_paired_asm": "GCA_005885635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/885/635/GCF_005885635.1_ASM588563v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5110706", "genome_size_ungapped": "5110696", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005885635.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4443", "protein_coding_gene_count": "4379", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-29", "dateModified": "2019-05-29", "datePublished": "2019-05-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Maribacter algarum" ], "sample_taxid": [ "2578118" ], "sample_host_organism": [ "red algae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Weihai" ], "sample_host_location_id": [], "data_size": "1.446 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5110706", "Number of Sequences": "20", "Longest Sequences (bp)": "2066491", "N50 (bp)": "1114618", "Gap Ratio (%)": "0.000196", "GCcontent (%)": "38.0", "Number of CDSs": "4348", "Average Protein Length": "355.2", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maribacter algarum", "strain": "strain=RZ26", "accession": "GCA_005885635.1", "taxid": 2578118, "species_taxid": 2578118, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1692, "total_fragments": 1692, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Maribacter forsetii", "strain": "strain=DSM 18668", "accession": "GCA_000744105.1", "taxid": 444515, "species_taxid": 444515, "relation_to_type": "type", "validated": true, "ani": 77.0914, "matched_fragments": 185, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter vaceletii", "strain": "strain=DSM 25230", "accession": "GCA_003634105.1", "taxid": 1206816, "species_taxid": 1206816, "relation_to_type": "type", "validated": true, "ani": 77.0631, "matched_fragments": 189, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter caenipelagi", "strain": "strain=CECT 8455", "accession": "GCA_004364175.1", "taxid": 1447781, "species_taxid": 1447781, "relation_to_type": "type", "validated": true, "ani": 77.0247, "matched_fragments": 178, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter stanieri", "strain": "strain=DSM 19891", "accession": "GCA_900112245.1", "taxid": 440514, "species_taxid": 440514, "relation_to_type": "type", "validated": true, "ani": 77.01, "matched_fragments": 179, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia amurskyensis", "strain": "strain=KMM 3526", "accession": "GCA_009725985.1", "taxid": 248905, "species_taxid": 248905, "relation_to_type": "type", "validated": true, "ani": 76.9444, "matched_fragments": 203, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter arcticus", "strain": "strain=DSM 23546", "accession": "GCA_900167935.1", "taxid": 561365, "species_taxid": 561365, "relation_to_type": "type", "validated": true, "ani": 76.9225, "matched_fragments": 182, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter aquivivus", "strain": "strain=DSM 16478", "accession": "GCA_900142175.1", "taxid": 228958, "species_taxid": 228958, "relation_to_type": "type", "validated": true, "ani": 76.9213, "matched_fragments": 200, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter arenosicollis", "strain": "strain=BSSL-BM3", "accession": "GCA_014397245.1", "taxid": 2762274, "species_taxid": 2762274, "relation_to_type": "type", "validated": true, "ani": 76.9136, "matched_fragments": 104, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter hydrothermalis", "strain": "strain=T28", "accession": "GCA_001913155.1", "taxid": 1836467, "species_taxid": 1836467, "relation_to_type": "type", "validated": true, "ani": 76.8029, "matched_fragments": 167, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter hydrothermalis", "strain": "strain=T28", "accession": "GCA_001673755.1", "taxid": 1836467, "species_taxid": 1836467, "relation_to_type": "type", "validated": true, "ani": 76.7694, "matched_fragments": 170, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 76.7194, "matched_fragments": 65, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter echinorum", "strain": "strain=DSM 23522", "accession": "GCA_003259375.1", "taxid": 440515, "species_taxid": 440515, "relation_to_type": "type", "validated": true, "ani": 76.7109, "matched_fragments": 123, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter latericius", "strain": "strain=DSM 15913", "accession": "GCA_000424985.1", "taxid": 86104, "species_taxid": 86104, "relation_to_type": "type", "validated": true, "ani": 76.6068, "matched_fragments": 103, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga tyrosinoxydans", "strain": "strain=DSM 21164", "accession": "GCA_900176415.1", "taxid": 504486, "species_taxid": 504486, "relation_to_type": "type", "validated": true, "ani": 76.4459, "matched_fragments": 155, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda hymeniacidonis", "strain": "strain=176CP4-71", "accession": "GCA_004296335.1", "taxid": 2517819, "species_taxid": 2517819, "relation_to_type": "type", "validated": true, "ani": 76.3659, "matched_fragments": 101, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.2182, "matched_fragments": 81, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.1654, "matched_fragments": 81, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda amphidinii", "strain": "strain=LMIT004", "accession": "GCA_013090115.1", "taxid": 2735167, "species_taxid": 2735167, "relation_to_type": "type", "validated": true, "ani": 76.051, "matched_fragments": 103, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera ponticola", "strain": "strain=MM-14", "accession": "GCA_012931685.1", "taxid": 2042995, "species_taxid": 2042995, "relation_to_type": "type", "validated": true, "ani": 76.0478, "matched_fragments": 69, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 76.0358, "matched_fragments": 68, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005885635.1", "gtdb_species": "s__RZ26 sp005885635", "ani": 100.0, "matched_fragments": 1692, "total_fragments": 1692, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__RZ26", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003232155.1", "gtdb_species": "s__RZ26 sp003232155", "ani": 77.8576, "matched_fragments": 193, "total_fragments": 1692, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__RZ26", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003970695.1", "gtdb_species": "s__Maribacter sp002742365", "ani": 77.6641, "matched_fragments": 195, "total_fragments": 1692, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "96.61", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000744105.1", "gtdb_species": "s__Maribacter forsetii", "ani": 77.08, "matched_fragments": 186, "total_fragments": 1692, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003634105.1", "gtdb_species": "s__Maribacter_B vaceletii", "ani": 77.0259, "matched_fragments": 192, "total_fragments": 1692, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004364175.1", "gtdb_species": "s__Maribacter caenipelagi", "ani": 77.0092, "matched_fragments": 178, "total_fragments": 1692, "gtdb_taxonomy": 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