{ "type": "genome", "identifier": "GCF_005887635.2", "organism": "Paroceanicella profunda", "title": "Paroceanicella profunda", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005887635.2", "bioproject": "PRJNA224116", "biosample": "SAMN11579697", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2579971", "species_taxid": "2579971", "organism_name": "Paroceanicella profunda", "infraspecific_name": "strain=D4M1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/23", "asm_name": "ASM588763v2", "asm_submitter": "Shanghai Ocean University", "gbrs_paired_asm": "GCA_005887635.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/887/635/GCF_005887635.2_ASM588763v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5468583", "genome_size_ungapped": "5468583", "gc_percent": "70.000000", "replicon_count": "7", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005887635.2-RS_2024_05_21", "annotation_date": "2024-05-21", "total_gene_count": "4855", "protein_coding_gene_count": "4731", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-23", "dateModified": "2019-07-23", "datePublished": "2019-07-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Paroceanicella profunda" ], "sample_taxid": [ "2579971" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Mariana Trench" ], "sample_host_location_id": [], "data_size": "1.468 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5468583", "Number of Sequences": "7", "Longest Sequences (bp)": "4039866", "N50 (bp)": "4039866", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.2", "Number of CDSs": "4937", "Average Protein Length": "316.8", "Coding Ratio (%)": "85.8", "Number of rRNAs": "12", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paroceanicella profunda", "strain": "strain=D4M1", "accession": "GCA_005887635.2", "taxid": 2579971, "species_taxid": 2579971, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1817, "total_fragments": 1820, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paracoccus binzhouensis", "strain": "strain=wg1", "accession": "GCA_016446475.1", "taxid": 2796149, "species_taxid": 2796149, "relation_to_type": "type", "validated": true, "ani": 78.3169, "matched_fragments": 505, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum dunhuangense", "strain": "strain=YYQ-30", "accession": "GCA_013093415.1", "taxid": 1505036, "species_taxid": 1505036, "relation_to_type": "type", "validated": true, "ani": 78.2968, "matched_fragments": 463, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 78.2789, "matched_fragments": 522, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { 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