{ "type": "genome", "identifier": "GCF_005889715.1", "organism": "Actinomadura soli", "title": "Actinomadura soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ondokuz Mayis Univesity", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005889715.1", "bioproject": "PRJNA224116", "biosample": "SAMN10791674", "wgs_master": "VCKW00000000.1", "refseq_category": "reference genome", "taxid": "2508997", "species_taxid": "2508997", "organism_name": "Actinomadura soli", "infraspecific_name": "strain=14C53", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/29", "asm_name": "ASM588971v1", "asm_submitter": "Ondokuz Mayis Univesity", "gbrs_paired_asm": "GCA_005889715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/889/715/GCF_005889715.1_ASM588971v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9041065", "genome_size_ungapped": "9041065", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "623", "contig_count": "623", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005889715.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "8595", "protein_coding_gene_count": "8264", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-29", "dateModified": "2019-05-29", "datePublished": "2019-05-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura soli" ], "sample_taxid": [ "2508997" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey: Samsun" ], 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"conclusive" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": "GCA_003432485.1", "taxid": 2303421, "species_taxid": 2303421, "relation_to_type": "type", "validated": true, "ani": 86.7132, "matched_fragments": 1679, "total_fragments": 2703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura pelletieri", "strain": "strain=DSM 43383", "accession": "GCA_003634705.1", "taxid": 111805, "species_taxid": 111805, "relation_to_type": "type", "validated": true, "ani": 86.534, "matched_fragments": 1632, "total_fragments": 2703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura decatromicini", "strain": "strain=CYP1-5", "accession": "GCA_008121305.1", "taxid": 2604572, "species_taxid": 2604572, "relation_to_type": "type", "validated": true, "ani": 86.3932, "matched_fragments": 1879, "total_fragments": 2703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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