{ "type": "genome", "identifier": "GCF_005889745.1", "organism": "Actinomadura geliboluensis", "title": "Actinomadura geliboluensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ondokuz Mayis Univesity", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005889745.1", "bioproject": "PRJNA224116", "biosample": "SAMN10791836", "wgs_master": "VCKZ00000000.1", "refseq_category": "na", "taxid": "882440", "species_taxid": "882440", "organism_name": "Actinomadura geliboluensis", "infraspecific_name": "strain=A8036", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/29", "asm_name": "ASM588974v1", "asm_submitter": "Ondokuz Mayis Univesity", "gbrs_paired_asm": "GCA_005889745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/889/745/GCF_005889745.1_ASM588974v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9420971", "genome_size_ungapped": "9420971", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "798", "contig_count": "798", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005889745.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "9003", "protein_coding_gene_count": "8706", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-29", "dateModified": "2019-05-29", "datePublished": "2019-05-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura geliboluensis" ], "sample_taxid": [ "882440" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey: Canakkale" ], "sample_host_location_id": [], "data_size": "2.541 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 10.42, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9420971", "Number of Sequences": "798", "Longest Sequences (bp)": "102943", "N50 (bp)": "18507", "Gap Ratio (%)": "0.000032", "GCcontent (%)": "72.2", "Number of CDSs": "8317", "Average Protein Length": "310.3", "Coding Ratio (%)": "82.2", "Number of rRNAs": "4", "Number of tRNAs": "73", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura geliboluensis", "strain": "strain=A8036", "accession": "GCA_005889745.1", "taxid": 882440, "species_taxid": 882440, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2722, "total_fragments": 2752, 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"strain=DSM 43675", "accession": "GCA_014208105.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 86.7197, "matched_fragments": 1676, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=JCM 3320", "accession": "GCA_014648535.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 86.7009, "matched_fragments": 1691, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura citrea", "strain": "strain=JCM 3295", "accession": "GCA_014648455.1", "taxid": 46158, "species_taxid": 46158, "relation_to_type": "type", "validated": true, "ani": 86.6186, "matched_fragments": 1756, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura citrea", "strain": "strain=DSM 43461", "accession": "GCA_013409045.1", "taxid": 46158, 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"validated": true, "ani": 84.374, "matched_fragments": 1400, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 83.6247, "matched_fragments": 1458, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 81.5749, "matched_fragments": 1376, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 81.1182, 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