{ "type": "genome", "identifier": "GCF_005930475.1", "organism": "Modestobacter altitudinis", "title": "Modestobacter altitudinis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nicolaus Copernicus University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005930475.1", "bioproject": "PRJNA224116", "biosample": "SAMN10967233", "wgs_master": "SJEW00000000.1", "refseq_category": "reference genome", "taxid": "2213158", "species_taxid": "2213158", "organism_name": "Modestobacter altitudinis", "infraspecific_name": "strain=1G4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/03", "asm_name": "ASM593047v1", "asm_submitter": "Nicolaus Copernicus University", "gbrs_paired_asm": "GCA_005930475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/930/475/GCF_005930475.1_ASM593047v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5175439", "genome_size_ungapped": "5175439", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "161", "contig_count": "161", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005930475.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "5024", "protein_coding_gene_count": "4893", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-03", "dateModified": "2019-06-03", "datePublished": "2019-06-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Modestobacter altitudinis" ], "sample_taxid": [ "2213158" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile" ], "sample_host_location_id": [], "data_size": "1.361 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5175439", "Number of Sequences": "161", "Longest Sequences (bp)": "175809", "N50 (bp)": "57547", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.7", "Number of CDSs": "4867", "Average Protein Length": "311.4", "Coding Ratio (%)": "87.8", "Number of rRNAs": "5", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Modestobacter altitudinis", "strain": "strain=1G4", "accession": "GCA_005930475.1", "taxid": 2213158, "species_taxid": 2213158, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1642, "total_fragments": 1648, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Modestobacter excelsi", "strain": "strain=1G6", "accession": "GCA_005930495.1", "taxid": 2213161, "species_taxid": 2213161, "relation_to_type": "type", "validated": true, "ani": 92.9261, "matched_fragments": 1290, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter versicolor", "strain": "strain=DSM 16678", "accession": "GCA_014195485.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 87.1271, "matched_fragments": 1118, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter versicolor", "strain": "strain=CP153-2", "accession": "GCA_003226595.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 87.0567, "matched_fragments": 919, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter marinus", "strain": "strain=DSM 45201", "accession": "GCA_011758655.1", "taxid": 477641, "species_taxid": 477641, "relation_to_type": "type", "validated": true, "ani": 85.3464, "matched_fragments": 1103, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter muralis", "strain": "strain=DSM 100205", "accession": "GCA_010686625.1", "taxid": 1608614, "species_taxid": 1608614, "relation_to_type": "type", "validated": true, "ani": 84.8041, "matched_fragments": 1029, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter muralis", "strain": "strain=DSM 100205", "accession": "GCA_010682105.1", "taxid": 1608614, "species_taxid": 1608614, "relation_to_type": "type", "validated": true, "ani": 84.7673, "matched_fragments": 1003, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter roseus", "strain": "strain=DSM 45764", "accession": "GCA_007994135.1", "taxid": 1181884, "species_taxid": 1181884, "relation_to_type": "type", "validated": true, "ani": 84.4743, "matched_fragments": 999, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Goekera deserti", "strain": "strain=CPCC 205119", "accession": "GCA_010685995.1", "taxid": 2497753, "species_taxid": 2497753, "relation_to_type": "type", "validated": true, "ani": 82.317, "matched_fragments": 936, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus sabuli", "strain": "strain=DSM 46844", "accession": "GCA_900215145.1", "taxid": 1564158, "species_taxid": 1564158, "relation_to_type": "type", "validated": true, "ani": 82.0804, "matched_fragments": 939, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus sabuli", "strain": "strain=CECT 8820", "accession": "GCA_014191795.1", "taxid": 1564158, "species_taxid": 1564158, "relation_to_type": "type", "validated": true, "ani": 82.0618, "matched_fragments": 929, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005930475.1", "gtdb_species": "s__Modestobacter altitudinis", "ani": 100.0, "matched_fragments": 1642, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_005930495.1", "gtdb_species": "s__Modestobacter excelsi", "ani": 92.9414, "matched_fragments": 1288, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000620205.1", "gtdb_species": "s__Modestobacter sp000620205", "ani": 91.6008, "matched_fragments": 1276, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000306785.1", "gtdb_species": "s__Modestobacter marinus_A", "ani": 91.5896, "matched_fragments": 1313, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014195485.1", "gtdb_species": "s__Modestobacter versicolor", "ani": 87.1293, "matched_fragments": 1118, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019112525.1", "gtdb_species": "s__Modestobacter sp019112525", "ani": 84.7183, "matched_fragments": 1003, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007994135.1", "gtdb_species": "s__Modestobacter roseus", "ani": 84.588, "matched_fragments": 987, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900107175.1", "gtdb_species": "s__Modestobacter sp900107175", "ani": 83.6645, "matched_fragments": 956, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006716365.1", "gtdb_species": "s__Modestobacter multiseptatus", "ani": 82.8707, "matched_fragments": 959, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009296285.1", "gtdb_species": "s__WGGQ01 sp009296285", "ani": 82.3375, "matched_fragments": 933, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__WGGQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.063, "cell_length": 0.15, "doubling_h": null, "growth_tmp": 26.25, "optimum_tmp": 24.5, "optimum_ph": 7.5, "genome_size": 5015227.25, "gc_content": 74.1, "coding_genes": 5230.0, "rRNA16S_genes": 3.0, "tRNA_genes": 47.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Modestobacter", "altitudinis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }