{
    "type": "genome",
    "identifier": "GCF_005938655.1",
    "organism": "Alloalcanivorax gelatiniphagus",
    "title": "Alloalcanivorax gelatiniphagus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Institute of Ocean Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005938655.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11877577",
        "wgs_master": "VCQT00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1194167",
        "species_taxid": "1194167",
        "organism_name": "Alloalcanivorax gelatiniphagus",
        "infraspecific_name": "strain=MEBiC 08158",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/03",
        "asm_name": "ASM593865v1",
        "asm_submitter": "Korea Institute of Ocean Science and Technology",
        "gbrs_paired_asm": "GCA_005938655.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/938/655/GCF_005938655.1_ASM593865v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4215373",
        "genome_size_ungapped": "4215373",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "50",
        "contig_count": "50",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_005938655.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "3875",
        "protein_coding_gene_count": "3807",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-03",
    "dateModified": "2019-06-03",
    "datePublished": "2019-06-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alloalcanivorax gelatiniphagus"
        ],
        "sample_taxid": [
            "1194167"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Taean County"
        ],
        "sample_host_location_id": [],
        "data_size": "1.160 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
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            "max": 30.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4215373",
        "Number of Sequences": "50",
        "Longest Sequences (bp)": "394716",
        "N50 (bp)": "195464",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.2",
        "Number of CDSs": "3835",
        "Average Protein Length": "327.9",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alcanivorax gelatiniphagus",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Alcanivorax marinus",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "ani_threshold": 95,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax balearicus",
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                "accession": "GCA_025532145.1",
                "taxid": 413232,
                "species_taxid": 413232,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax hongdengensis",
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                "taxid": 519051,
                "species_taxid": 519051,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax xenomutans",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Alcanivorax limicola",
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                "accession": "GCA_019931215.1",
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                "species_taxid": 2874102,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 311,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aromaticivorans",
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                "accession": "GCA_019097855.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pseudomonas mangiferae",
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                "accession": "GCA_007109405.1",
                "taxid": 2593654,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "accession": "GCF_005938655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax",
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                "mean_intra_species_ani": "N/A",
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    "_bac2feature": {
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    },
    "_genome_taxon": [
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    "quality": 4,
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}