{ "type": "genome", "identifier": "GCF_006007965.1", "organism": "Nocardioides jishulii", "title": "Nocardioides jishulii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese center for disease control and prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006007965.1", "bioproject": "PRJNA224116", "biosample": "SAMN11521402", "wgs_master": "na", "refseq_category": "na", "taxid": "2575440", "species_taxid": "2575440", "organism_name": "Nocardioides jishulii", "infraspecific_name": "strain=dk3136", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/05", "asm_name": "ASM600796v1", "asm_submitter": "Chinese center for disease control and prevention", "gbrs_paired_asm": "GCA_006007965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/007/965/GCF_006007965.1_ASM600796v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3536142", "genome_size_ungapped": "3536142", "gc_percent": "70.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006007965.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3412", "protein_coding_gene_count": "3325", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-05", "dateModified": "2019-06-05", "datePublished": "2019-06-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides jishulii" ], "sample_taxid": [ "2575440" ], "sample_host_organism": [ "Tibetan gazelle" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Naqu City, Tibet Autonomous Region" ], "sample_host_location_id": [], "data_size": "0.945 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3536142", "Number of Sequences": "1", "Longest Sequences (bp)": "3536142", "N50 (bp)": "3536142", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.4", "Number of CDSs": "3393", "Average Protein Length": "319.8", "Coding Ratio (%)": "92.1", "Number of rRNAs": "9", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides jishulii", "strain": "strain=dk3136", "accession": "GCA_006007965.1", "taxid": 2575440, "species_taxid": 2575440, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1178, "total_fragments": 1178, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides daphniae", "strain": "strain=CCM 7403", "accession": "GCA_014635145.1", "taxid": 402297, "species_taxid": 402297, "relation_to_type": "type", "validated": true, "ani": 87.251, "matched_fragments": 925, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides daphniae", "strain": "strain=JCM 16608", "accession": "GCA_004777465.1", "taxid": 402297, "species_taxid": 402297, "relation_to_type": "type", "validated": true, "ani": 87.2126, "matched_fragments": 919, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides malaquae", "strain": "strain=Y6", "accession": "GCA_015070385.1", "taxid": 2773426, "species_taxid": 2773426, "relation_to_type": "type", "validated": true, "ani": 83.6588, "matched_fragments": 752, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides gilvus", "strain": "strain=XZ17", "accession": "GCA_003194605.1", "taxid": 1735589, "species_taxid": 1735589, "relation_to_type": "type", "validated": true, "ani": 81.9922, "matched_fragments": 735, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides yefusunii", "strain": "strain=HY056", "accession": "GCA_004014875.1", "taxid": 2500546, "species_taxid": 2500546, "relation_to_type": "type", "validated": true, "ani": 81.3604, "matched_fragments": 629, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides solisilvae", "strain": "strain=Ka25", "accession": "GCA_003194625.1", "taxid": 1542435, "species_taxid": 1542435, "relation_to_type": "type", "validated": true, "ani": 81.2813, "matched_fragments": 641, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides houyundeii", "strain": "strain=78", "accession": "GCA_002865585.1", "taxid": 2045452, "species_taxid": 2045452, "relation_to_type": "type", "validated": true, "ani": 80.9017, "matched_fragments": 640, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 80.4737, "matched_fragments": 586, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 80.4278, "matched_fragments": 577, "total_fragments": 1178, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides gansuensis", "strain": 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