{
    "type": "genome",
    "identifier": "GCF_006094415.1",
    "organism": "Micrococcus luteus",
    "title": "Micrococcus luteus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zhejiang Tianke High Technology Development Co.Ltd.",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006094415.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10761220",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1270",
        "species_taxid": "1270",
        "organism_name": "Micrococcus luteus",
        "infraspecific_name": "strain=ATCC 4698",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/06",
        "asm_name": "ASM609441v1",
        "asm_submitter": "Zhejiang Tianke High Technology Development Co.Ltd.",
        "gbrs_paired_asm": "GCA_006094415.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/094/415/GCF_006094415.1_ASM609441v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2560556",
        "genome_size_ungapped": "2560556",
        "gc_percent": "73.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006094415.1-RS_2024_05_17",
        "annotation_date": "2024-05-17",
        "total_gene_count": "2447",
        "protein_coding_gene_count": "2215",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-06",
    "dateModified": "2019-06-06",
    "datePublished": "2019-06-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Micrococcus luteus"
        ],
        "sample_taxid": [
            "1270"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.663 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2560556",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2560556",
        "N50 (bp)": "2560556",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.1",
        "Number of CDSs": "2478",
        "Average Protein Length": "311.5",
        "Coding Ratio (%)": "90.4",
        "Number of rRNAs": "6",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Micrococcus luteus",
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                "relation_to_type": "type",
                "validated": true,
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            {
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            {
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Micrococcus endophyticus",
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                "taxid": 455343,
                "species_taxid": 455343,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micrococcus flavus",
                "strain": "strain=DSM 19079",
                "accession": "GCA_022348285.1",
                "taxid": 384602,
                "species_taxid": 384602,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 617,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanitalea stevensii",
                "strain": "strain=Sa1BUA1",
                "accession": "GCA_014837105.1",
                "taxid": 2763072,
                "species_taxid": 2763072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0596,
                "matched_fragments": 261,
                "total_fragments": 853,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces agglutinans",
                "strain": "strain=CFH 90414",
                "accession": "GCA_009647605.1",
                "taxid": 2662258,
                "species_taxid": 2662258,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinotalea solisilvae",
                "strain": "strain=KACC 19191",
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                "taxid": 2072922,
                "species_taxid": 2072922,
                "relation_to_type": "type",
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                "ani": 76.7769,
                "matched_fragments": 276,
                "total_fragments": 853,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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                "accession": "GCF_000023205.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus",
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                "mean_intra_species_ani": "97.15",
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.47",
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                "mean_intra_species_af": "1.00",
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            },
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                "accession": "GCF_014205175.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.113,
        "cell_length": -0.065,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "luteus"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}