{
    "type": "genome",
    "identifier": "GCF_006094455.1",
    "organism": "Morganella morganii subsp. morganii",
    "title": "Morganella morganii subsp. morganii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zhejiang Tianke High Technology Development Co.Ltd.",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006094455.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10712293",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "180434",
        "species_taxid": "582",
        "organism_name": "Morganella morganii subsp. morganii",
        "infraspecific_name": "strain=ATCC 25830",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/06",
        "asm_name": "ASM609445v1",
        "asm_submitter": "Zhejiang Tianke High Technology Development Co.Ltd.",
        "gbrs_paired_asm": "GCA_006094455.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/094/455/GCF_006094455.1_ASM609445v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3889903",
        "genome_size_ungapped": "3889903",
        "gc_percent": "51.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006094455.1-RS_2024_03_31",
        "annotation_date": "2024-03-31",
        "total_gene_count": "3726",
        "protein_coding_gene_count": "3574",
        "non_coding_gene_count": "107",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-06",
    "dateModified": "2019-06-06",
    "datePublished": "2019-06-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Morganella morganii subsp. morganii"
        ],
        "sample_taxid": [
            "180434"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.094 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3889903",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3889903",
        "N50 (bp)": "3889903",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.0",
        "Number of CDSs": "3681",
        "Average Protein Length": "305.6",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "22",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Morganella morganii subsp. morganii",
                "strain": "strain=ATCC 25830",
                "accession": "GCA_006094455.1",
                "taxid": 180434,
                "species_taxid": 582,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1295,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Morganella morganii",
                "strain": "strain=DSM 30164",
                "accession": "GCA_019243775.1",
                "taxid": 582,
                "species_taxid": 582,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.8266,
                "matched_fragments": 1207,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Morganella morganii subsp. morganii",
                "strain": "strain=NBRC 3848",
                "accession": "GCA_001598895.1",
                "taxid": 180434,
                "species_taxid": 582,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.8032,
                "matched_fragments": 1196,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Morganella psychrotolerans",
                "strain": "strain=GCSL-P101",
                "accession": "GCA_001676155.1",
                "taxid": 368603,
                "species_taxid": 368603,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8596,
                "matched_fragments": 972,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leclercia pneumoniae",
                "strain": "strain=49125",
                "accession": "GCA_017348915.1",
                "taxid": 2815358,
                "species_taxid": 2815358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6094,
                "matched_fragments": 235,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea deleyi",
                "strain": "strain=LMG24200",
                "accession": "GCA_022647325.1",
                "taxid": 470932,
                "species_taxid": 470932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3822,
                "matched_fragments": 242,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leclercia pneumoniae",
                "strain": "strain=49125",
                "accession": "GCA_018987305.1",
                "taxid": 2815358,
                "species_taxid": 2815358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3559,
                "matched_fragments": 237,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xenorhabdus mauleonii",
                "strain": "strain=DSM 17908",
                "accession": "GCA_002632685.1",
                "taxid": 351675,
                "species_taxid": 351675,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3,
                "matched_fragments": 174,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salmonella enterica subsp. enterica",
                "strain": "strain=PartC-Senterica-RM8376",
                "accession": "GCA_022869965.1",
                "taxid": 59201,
                "species_taxid": 28901,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.2885,
                "matched_fragments": 244,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shimwellia blattae",
                "strain": "strain=NBRC 105725",
                "accession": "GCA_000327265.1",
                "taxid": 563,
                "species_taxid": 563,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1237,
                "matched_fragments": 267,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9953,
                "matched_fragments": 250,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia proteamaculans",
                "strain": "strain=CCUG 14510",
                "accession": "GCA_008830365.1",
                "taxid": 28151,
                "species_taxid": 28151,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9491,
                "matched_fragments": 253,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter sakazakii",
                "strain": "strain=ATCC 29544",
                "accession": "GCA_001971035.1",
                "taxid": 28141,
                "species_taxid": 28141,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7194,
                "matched_fragments": 265,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea wallisii",
                "strain": "strain=LMG 26277",
                "accession": "GCA_002095485.1",
                "taxid": 1076551,
                "species_taxid": 1076551,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7033,
                "matched_fragments": 217,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella perminowiae",
                "strain": "strain=SL6",
                "accession": "GCA_019049755.1",
                "taxid": 2816244,
                "species_taxid": 2816244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6166,
                "matched_fragments": 241,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rouxiella aceris",
                "strain": "strain=SAP-1",
                "accession": "GCA_012933545.1",
                "taxid": 2703884,
                "species_taxid": 2703884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5601,
                "matched_fragments": 209,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_019243775.1",
                "gtdb_species": "s__Morganella morganii",
                "ani": 98.8469,
                "matched_fragments": 1206,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Morganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "95.47",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 171,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000633515.1",
                "gtdb_species": "s__Morganella morganii_B",
                "ani": 94.1215,
                "matched_fragments": 1109,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Morganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.84",
                "min_intra_species_ani": "95.81",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003996855.1",
                "gtdb_species": "s__Morganella morganii_C",
                "ani": 92.1093,
                "matched_fragments": 1055,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Morganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_019242955.1",
                "gtdb_species": "s__Morganella morganii_A",
                "ani": 92.0001,
                "matched_fragments": 1143,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Morganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "97.24",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCF_001676055.1",
                "gtdb_species": "s__Morganella psychrotolerans_B",
                "ani": 83.9585,
                "matched_fragments": 1011,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Morganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.92",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001676155.1",
                "gtdb_species": "s__Morganella psychrotolerans",
                "ani": 83.8529,
                "matched_fragments": 972,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Morganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "95.31",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_011046025.1",
                "gtdb_species": "s__Proteus sp011046025",
                "ani": 79.4544,
                "matched_fragments": 151,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus",
                "ani_circumscription_radius": 95.836,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017348915.1",
                "gtdb_species": "s__UBA7405 sp000755535",
                "ani": 78.6594,
                "matched_fragments": 237,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__UBA7405",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_009363175.1",
                "gtdb_species": "s__Citrobacter_A telavivensis",
                "ani": 78.4206,
                "matched_fragments": 265,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002953215.1",
                "gtdb_species": "s__Mixta calida",
                "ani": 78.398,
                "matched_fragments": 234,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Mixta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.42",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 22,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 36.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 3962881.484,
        "gc_content": 51.013,
        "coding_genes": 3642.3,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 80.889,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Morganella",
        "morganii",
        "subsp.",
        "morganii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}