# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_26	LOCUS_00260	sequence1:36029..36481(-)	partial			WP_001827266.1	tRNA-dihydrouridine synthase	100.0	48.4	96.0
MGA_52	LOCUS_00520	sequence1:67841..68095(+)	partial			WP_000577184.1	GntR family transcriptional regulator	94.0	34.9	40.7
MGA_53	LOCUS_00530	sequence1:68123..69238(+)	internal_stop_codon	68093..68095(+)		WP_003244019.1	PLP-dependent aminotransferase family protein	100.0	77.0	37.2
MGA_72	LOCUS_00720	sequence1:90559..90900(+)	partial			WP_000414629.1	MFS transporter	100.0	54.3	98.2
MGA_93	LOCUS_00930	sequence1:112172..112366(+)	partial			WP_000469833.1	XRE family transcriptional regulator	100.0	16.4	98.4
MGA_94	LOCUS_00940	sequence1:112739..113224(+)	frameshift		113152	WP_011117535.1	replication initiation factor domain-containing protein	89.4	49.0	73.3
MGA_95	LOCUS_00950	sequence1:113209..113499(+)	frameshift		113152	WP_011117535.1	replication initiation factor domain-containing protein	99.0	31.0	63.2
MGA_97	LOCUS_00970	sequence1:114523..114744(+)	frameshift,internal_stop_codon	114308..114310(+)	114514	WP_000093392.1	IS200/IS605 family transposase	87.7	39.8	98.4
MGA_148	LOCUS_01480	sequence1:181126..182085(+)	partial			WP_001796914.1	ABC transporter permease	100.0	64.8	91.5
MGA_215	LOCUS_02150	sequence1:263211..263438(+)	partial			WP_126475239.1	IS1182 family transposase	85.3	11.7	98.4
MGA_243	LOCUS_02430	sequence1:291727..291879(+)	frameshift		291870	WP_000141941.1	TIGR01741 family protein	96.0	28.9	87.5
MGA_244	LOCUS_02440	sequence1:291923..292222(+)	frameshift		291870	WP_000141941.1	TIGR01741 family protein	100.0	59.6	81.8
MGA_294	LOCUS_02940	sequence1:339933..340229(+)	partial			WP_000093025.1	hypothetical protein	100.0	72.6	98.0
MGA_322	LOCUS_03220	sequence1:366162..366473(-)	frameshift		366570,366465,366738,366369	WP_047210621.1	site-specific integrase	75.7	19.2	66.7
MGA_323	LOCUS_03230	sequence1:366551..366709(-)	frameshift		366464,366737,366377,366572,366830	WP_047210621.1	site-specific integrase	88.5	11.3	84.8
MGA_356	LOCUS_03560	sequence1:397296..397991(+)	partial			WP_000705657.1	superantigen-like protein SSL4	92.2	72.6	42.3
MGA_368	LOCUS_03680	sequence1:410294..410767(+)	frameshift		411041,410758	WP_001557596.1	tandem-type lipoprotein	88.5	51.9	83.5
MGA_369	LOCUS_03690	sequence1:410883..411101(+)	frameshift		411041,410758	WP_001557596.1	tandem-type lipoprotein	98.6	26.2	78.9
MGA_498	LOCUS_04910	sequence1:562420..565407(+)	partial			WP_001060462.1	MSCRAMM family adhesin SdrC	72.1	75.2	94.7
MGA_529	LOCUS_05220	sequence1:601282..601623(+)	partial			WP_000798967.1	DUF1450 domain-containing protein	69.0	69.0	100.0
MGA_543	LOCUS_05360	sequence1:613013..613258(+)	partial			WP_000020814.1	T7SS effector LXG polymorphic toxin	66.7	11.6	57.4
MGA_634	LOCUS_06270	sequence1:704057..704341(-)	partial			WP_001801730.1	hypothetical protein	90.4	73.9	100.0
MGA_698	LOCUS_06910	sequence1:774148..774480(+)	internal_stop_codon	774478..774480(+)		WP_000538141.1	HD domain-containing protein	100.0	50.9	97.3
MGA_699	LOCUS_06920	sequence1:774568..774798(+)	internal_stop_codon	774478..774480(+)		WP_000538141.1	HD domain-containing protein	100.0	35.2	98.7
MGA_731	LOCUS_07240	sequence1:810448..813177(+)	partial			WP_001056195.1	MSCRAMM family adhesin clumping factor ClfA	61.5	56.5	82.6
MGA_732	LOCUS_07250	sequence1:813398..813517(+)	frameshift		813511	WP_000791702.1	von Willebrand factor binding protein Vwb	94.9	7.4	97.3
MGA_774	LOCUS_07670	sequence1:845100..845867(+)	partial			WP_001148557.1	phage antirepressor KilAC domain-containing protein	73.3	72.2	88.2
MGA_787	LOCUS_07800	sequence1:850443..851213(+)	partial			WP_000190248.1	DnaD domain protein	38.3	39.1	43.9
MGA_953	LOCUS_09460	sequence1:1012405..1012620(-)	partial			WP_001788574.1	NINE protein	100.0	74.0	97.2
MGA_991	LOCUS_09840	sequence1:1055779..1055913(-)	partial			WP_000064214.1	glycopeptide resistance-associated protein GraF	54.5	54.5	100.0
MGA_1068	LOCUS_10610	sequence1:1133891..1134217(+)	internal_stop_codon	1134215..1134217(+)		WP_000584398.1	hypothetical protein	91.7	58.9	87.9
MGA_1107	LOCUS_11000	sequence1:1172663..1172857(-)	partial			WP_126475239.1	IS1182 family transposase	81.2	9.5	98.1
MGA_1126	LOCUS_11190	sequence1:1194769..1194972(-)	partial			WP_001548522.1	TM2 domain-containing protein	100.0	72.8	100.0
MGA_1154	LOCUS_11470	sequence1:1223767..1225125(-)	partial			WP_000915238.1	lipoteichoic acid-specific glycosyltransferase YfhO	100.0	52.1	93.4
MGA_1226	LOCUS_12190	sequence1:1310348..1310932(+)	partial			WP_002485350.1	minor capsid protein	68.6	35.5	56.0
MGA_1230	LOCUS_12230	sequence1:1312406..1312696(+)	internal_stop_codon	1312394..1312396(+),1312313..1312315(+)		WP_002485350.1	minor capsid protein	94.8	22.8	45.1
MGA_1232	LOCUS_12250	sequence1:1312951..1313292(+)	partial			WP_002485350.1	minor capsid protein	100.0	25.2	71.7
MGA_1306	LOCUS_12990	sequence1:1394516..1394812(+)	partial			WP_126475239.1	IS1182 family transposase	99.0	17.8	94.8
MGA_1322	LOCUS_13150	sequence1:1410434..1410628(-)	frameshift		1410672	WP_126475239.1	IS1182 family transposase	100.0	11.7	98.4
MGA_1323	LOCUS_13160	sequence1:1410646..1411038(-)	frameshift		1410672	WP_126475239.1	IS1182 family transposase	67.7	16.1	87.5
MGA_1403	LOCUS_13960	sequence1:1524959..1525165(-)	partial			WP_001033761.1	hypothetical protein	92.6	8.8	63.5
MGA_1492	LOCUS_14850	sequence1:1606589..1606765(-)	partial			WP_000048060.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_1539	LOCUS_15320	sequence1:1654433..1654579(-)	partial			WP_000009238.1	SAS049 family protein	72.9	72.9	100.0
MGA_1602	LOCUS_15950	sequence1:1724443..1725270(-)	frameshift,internal_stop_codon	1725291..1725293(-)	1725293	WP_126475239.1	IS1182 family transposase	100.0	50.5	96.7
MGA_1603	LOCUS_15960	sequence1:1725267..1726094(-)	frameshift,internal_stop_codon	1725291..1725293(-)	1725293	WP_126475239.1	IS1182 family transposase	95.3	48.1	94.3
MGA_1635	LOCUS_16280	sequence1:1764996..1765751(+)	frameshift		1765589	WP_000184370.1	transglycosylase domain-containing protein	78.9	65.8	94.9
MGA_1636	LOCUS_16290	sequence1:1765700..1765900(+)	frameshift		1765589	WP_000184370.1	transglycosylase domain-containing protein	100.0	21.9	98.5
MGA_1644	LOCUS_16370	sequence1:1778350..1779390(-)	partial			WP_000193903.1	hypothetical protein	84.1	62.4	73.2
MGA_1669	LOCUS_16620	sequence1:1813614..1813838(-)	frameshift		1813666,1813861	WP_126475239.1	IS1182 family transposase	78.4	12.3	82.1
MGA_1670	LOCUS_16630	sequence1:1813835..1814326(-)	frameshift		1813665,1814274,1813860	WP_126475239.1	IS1182 family transposase	84.7	25.3	93.5
MGA_1692	LOCUS_16850	sequence1:1832210..1833034(+)	frameshift		1833031	WP_126475239.1	IS1182 family transposase	100.0	50.3	96.0
MGA_1693	LOCUS_16860	sequence1:1833067..1833675(+)	frameshift		1833031	WP_126475239.1	IS1182 family transposase	100.0	37.1	97.0
MGA_1715	LOCUS_17080	sequence1:1850709..1850852(-)	frameshift,internal_stop_codon	1850709..1850711(-)	1850699	WP_000159787.1	transposase	89.4	46.7	76.2
MGA_1716	LOCUS_17090	sequence1:1851722..1852099(-)	partial			WP_010989411.1	DUF1433 domain-containing protein	74.4	66.9	44.1
MGA_1717	LOCUS_17100	sequence1:1852619..1856731(-)	partial			WP_011391500.1	hypothetical protein	48.8	43.2	26.4
MGA_1730	LOCUS_17230	sequence1:1869779..1871152(-)	partial			WP_000699969.1	S8 family serine peptidase	69.1	55.1	38.9
MGA_1731	LOCUS_17240	sequence1:1871162..1871680(-)	partial			WP_010880496.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	77.9	35.3	38.0
MGA_1732	LOCUS_17250	sequence1:1871696..1872940(-)	partial			WP_011026975.1	lanthionine synthetase C family protein	75.1	69.1	24.1
MGA_1770	LOCUS_17620	sequence1:1915673..1916776(+)	frameshift,internal_stop_codon	1916775..1916777(+)	1915661	WP_001557163.1	ISL3-like element IS1181 family transposase	100.0	83.6	97.3
MGA_1866	LOCUS_18550	sequence1:2018159..2018506(+)	frameshift		2018097,2018374	WP_000179343.1	tyrosine-type recombinase/integrase	100.0	29.7	54.2
MGA_1870	LOCUS_18590	sequence1:2021647..2022906(-)	partial			WP_000120296.1	SdrH family protein	53.9	54.5	95.1
MGA_1950	LOCUS_19370	sequence1:2107942..2108295(-)	partial			WP_001801792.1	ATP synthase subunit I	83.8	65.3	98.0
MGA_1988	LOCUS_19750	sequence1:2146650..2146859(-)	frameshift,internal_stop_codon	2146650..2146652(-)	2146830	WP_010925589.1	recombinase family protein	84.1	53.6	73.3
MGA_2021	LOCUS_20060	sequence1:2198531..2199331(+)	frameshift		2199199	WP_126475239.1	IS1182 family transposase	95.1	47.7	80.0
MGA_2022	LOCUS_20070	sequence1:2199328..2199648(+)	frameshift,internal_stop_codon	2199647..2199649(+)	2199199	WP_126475239.1	IS1182 family transposase	100.0	19.4	100.0
MGA_2023	LOCUS_20080	sequence1:2199811..2200155(+)	internal_stop_codon	2199646..2199648(+)		WP_126475239.1	IS1182 family transposase	99.1	20.7	99.1
MGA_2052	LOCUS_20370	sequence1:2229547..2230683(-)	partial			WP_003549016.1	ATP-dependent Clp protease ATP-binding subunit	88.6	46.2	23.4
MGA_2054	LOCUS_20390	sequence1:2231488..2231781(-)	frameshift		2231780	WP_010939452.1	DEAD/DEAH box helicase family protein	96.9	6.1	47.4
MGA_2055	LOCUS_20400	sequence1:2231778..2232875(-)	frameshift		2233104,2232978,2231780	WP_011202675.1	DEAD/DEAH box helicase family protein	100.0	24.7	33.1
MGA_2150	LOCUS_21340	sequence1:2312684..2312998(+)	frameshift		2312881	WP_126475239.1	IS1182 family transposase	81.7	14.7	72.9
MGA_2197	LOCUS_21810	sequence1:2359603..2359959(+)	partial			WP_126475239.1	IS1182 family transposase	87.3	18.9	94.2
MGA_2226	LOCUS_22100	sequence1:2390973..2391611(+)	internal_stop_codon	2391609..2391611(+)		WP_000276759.1	DUF2268 domain-containing protein	100.0	69.7	99.1
MGA_2227	LOCUS_22110	sequence1:2391681..2391887(+)	internal_stop_codon	2391609..2391611(+)		WP_000276759.1	DUF2268 domain-containing protein	100.0	22.4	100.0
MGA_2325	LOCUS_23090	sequence1:2492597..2492878(-)	frameshift		2492892	WP_001044255.1	membrane protein	100.0	21.1	96.8
MGA_2326	LOCUS_23100	sequence1:2492809..2493921(-)	frameshift		2492889	WP_001044255.1	membrane protein	93.0	78.0	87.5
MGA_2334	LOCUS_23180	sequence1:2502184..2502354(-)	partial			WP_001795286.1	hypothetical protein	100.0	72.7	92.9
MGA_2353	LOCUS_23370	sequence1:2530385..2530849(-)	partial			WP_011948695.1	MarR family transcriptional regulator	85.1	73.0	38.2
MGA_2415	LOCUS_23990	sequence1:2597600..2597920(+)	partial			WP_001795157.1	hypothetical protein	100.0	63.9	99.1
MGA_2455	LOCUS_24390	sequence1:2635585..2636271(-)	partial			WP_003894962.1	MBL fold metallo-hydrolase	61.4	67.3	30.8
MGA_2472	LOCUS_24560	sequence1:2656164..2658797(-)	partial			WP_000745891.1	MSCRAMM family adhesin clumping factor ClfB	62.9	62.9	97.6
MGA_2496	LOCUS_24800	sequence1:2693125..2693496(-)	partial			WP_000044547.1	serine-rich repeat glycoprotein adhesin SasA	55.3	3.0	92.6
MGA_2497	LOCUS_24810	sequence1:2693477..2694241(+)	internal_stop_codon	2693324..2693326(+),2694239..2694241(+),2693381..2693383(+),2693387..2693389(+)		WP_002485492.1	hypothetical protein	63.0	29.8	34.1
MGA_2498	LOCUS_24820	sequence1:2694365..2695573(+)	internal_stop_codon	2694239..2694241(+),2695751..2695753(+),2695571..2695573(+),2695649..2695651(+)		WP_002485492.1	hypothetical protein	99.0	73.8	38.0
MGA_2499	LOCUS_24830	sequence1:2695853..2696653(+)	internal_stop_codon	2695751..2695753(+),2695571..2695573(+),2695841..2695843(+),2696651..2696653(+),2696741..2696743(+),2696825..2696827(+),2695649..2695651(+)		WP_002485492.1	hypothetical protein	99.2	50.8	40.7
MGA_2500	LOCUS_24840	sequence1:2696831..2697109(+)	internal_stop_codon	2696825..2696827(+),2697107..2697109(+),2696651..2696653(+),2696741..2696743(+)		WP_002485492.1	hypothetical protein	95.7	19.6	41.7
MGA_2501	LOCUS_24850	sequence1:2697119..2697643(+)	internal_stop_codon	2697641..2697643(+),2697107..2697109(+)		WP_002485492.1	hypothetical protein	98.3	42.4	39.6
MGA_2519	LOCUS_25030	sequence1:2714995..2715207(-)	partial			WP_000837587.1	hypothetical protein	64.3	76.3	95.6
MGA_2520	LOCUS_25040	sequence1:2715367..2715999(-)	frameshift		2716013	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	100.0	45.5	100.0
MGA_2521	LOCUS_25050	sequence1:2715996..2716754(-)	frameshift		2716010	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	98.4	53.7	100.0
MGA_2551	LOCUS_25350	sequence1:2744233..2744643(+)	frameshift		2744613	WP_002305939.1	IS30 family transposase	97.1	41.4	67.4
MGA_2553	LOCUS_25370	sequence1:2745279..2745629(+)	partial			WP_002305939.1	IS30 family transposase	89.7	32.6	70.2
MGA_2565	LOCUS_25490	sequence1:2754205..2754342(-)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_2580	LOCUS_25640	sequence2:10637..10972(-)	partial			WP_031588332.1	recombinase family protein	100.0	55.8	99.1
