{ "type": "genome", "identifier": "GCF_006125015.1", "organism": "Roseovarius arcticus", "title": "Roseovarius arcticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wuhan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006125015.1", "bioproject": "PRJNA224116", "biosample": "SAMN11584703", "wgs_master": "SZZN00000000.1", "refseq_category": "reference genome", "taxid": "2547404", "species_taxid": "2547404", "organism_name": "Roseovarius arcticus", "infraspecific_name": "strain=MK6-18", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/06", "asm_name": "ASM612501v1", "asm_submitter": "Wuhan University", "gbrs_paired_asm": "GCA_006125015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/125/015/GCF_006125015.1_ASM612501v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4221330", "genome_size_ungapped": "4221330", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006125015.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4070", "protein_coding_gene_count": "3917", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-06", "dateModified": "2019-06-06", "datePublished": "2019-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseovarius arcticus" ], "sample_taxid": [ "2547404" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Arctic Ocean" ], "sample_host_location_id": [], "data_size": "1.192 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4221330", "Number of Sequences": "2", "Longest Sequences (bp)": "4101874", "N50 (bp)": "4101874", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.4", "Number of CDSs": "4112", "Average Protein Length": "303.0", "Coding Ratio (%)": "88.6", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 80.6132, "matched_fragments": 683, "total_fragments": 1406, "ani_threshold": 95, 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"Roseovarius mucosus", "strain": "strain=DSM 17069", "accession": "GCA_000768555.3", "taxid": 215743, "species_taxid": 215743, "relation_to_type": "type", "validated": true, "ani": 77.4529, "matched_fragments": 275, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=22DY15", "accession": "GCA_002094875.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 77.4498, "matched_fragments": 193, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 77.3455, "matched_fragments": 212, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=DSM 29507", "accession": "GCA_003634925.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 77.3212, "matched_fragments": 290, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=CECT 8110", "accession": "GCA_900172255.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 77.3024, "matched_fragments": 292, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium sediminis", "strain": "strain=DSM 29052", "accession": "GCA_900188035.1", "taxid": 1608407, "species_taxid": 1608407, "relation_to_type": "type", "validated": true, "ani": 77.2261, "matched_fragments": 226, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius tolerans", "strain": "strain=DSM 11457", "accession": "GCA_900109855.1", "taxid": 74031, "species_taxid": 74031, "relation_to_type": "type", "validated": true, "ani": 77.1709, "matched_fragments": 326, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter sabulilitoris", "strain": "strain=HSMS-29", "accession": "GCA_005887615.1", "taxid": 2562655, "species_taxid": 2562655, "relation_to_type": "type", "validated": true, "ani": 77.1676, "matched_fragments": 275, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.0907, "matched_fragments": 277, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.0669, "matched_fragments": 276, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 77.0346, "matched_fragments": 225, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Primorskyibacter sedentarius", "strain": "strain=DSM 104836", "accession": "GCA_004342065.1", "taxid": 745311, "species_taxid": 745311, "relation_to_type": "type", "validated": true, "ani": 77.0045, "matched_fragments": 247, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 76.9538, "matched_fragments": 232, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius confluentis", "strain": "strain=SAG6", "accession": "GCA_002917925.1", "taxid": 1852027, "species_taxid": 1852027, "relation_to_type": "type", "validated": true, "ani": 76.8986, "matched_fragments": 278, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.8623, "matched_fragments": 173, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter delicatus", "strain": "strain=DSM 16477", "accession": "GCA_900102535.1", "taxid": 218672, "species_taxid": 218672, "relation_to_type": "type", "validated": true, "ani": 76.8271, "matched_fragments": 226, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita cryptomonadis", "strain": "strain=CL-SK44", "accession": "GCA_002115725.1", "taxid": 505252, "species_taxid": 505252, "relation_to_type": "type", "validated": true, "ani": 76.6906, "matched_fragments": 197, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sagittula marina", "strain": "strain=DSM 102235", "accession": "GCA_014196795.1", "taxid": 943940, "species_taxid": 943940, "relation_to_type": "type", "validated": true, "ani": 76.6538, "matched_fragments": 162, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.6234, "matched_fragments": 165, "total_fragments": 1406, "ani_threshold": 95, "status": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Roseovarius", "arcticus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }