{ "type": "genome", "identifier": "GCF_006152115.1", "organism": "Rubellimicrobium rubrum", "title": "Rubellimicrobium rubrum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006152115.1", "bioproject": "PRJNA224116", "biosample": "SAMN11936696", "wgs_master": "VDFU00000000.1", "refseq_category": "reference genome", "taxid": "2585369", "species_taxid": "2585369", "organism_name": "Rubellimicrobium rubrum", "infraspecific_name": "strain=YIM 131921", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/09", "asm_name": "ASM615211v1", "asm_submitter": "Yunnan University", "gbrs_paired_asm": "GCA_006152115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/152/115/GCF_006152115.1_ASM615211v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4615821", "genome_size_ungapped": "4615821", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "104", "contig_count": "104", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006152115.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4335", "protein_coding_gene_count": "4164", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-09", "dateModified": "2019-06-09", "datePublished": "2019-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Rubellimicrobium rubrum" ], "sample_taxid": [ "2585369" ], "sample_host_organism": [ "Lichen" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.282 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4615821", "Number of Sequences": "104", "Longest Sequences (bp)": "375242", "N50 (bp)": "145678", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "4369", "Average Protein Length": "304.0", "Coding Ratio (%)": "86.3", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rubellimicrobium rubrum", "strain": "strain=YIM 131921", "accession": "GCA_006152115.1", "taxid": 2585369, "species_taxid": 2585369, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1487, "total_fragments": 1489, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rubellimicrobium roseum", "strain": "strain=YIM 48858", "accession": "GCA_006152145.1", "taxid": 687525, "species_taxid": 687525, "relation_to_type": "type", "validated": true, "ani": 82.2608, "matched_fragments": 831, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubellimicrobium aerolatum", "strain": "strain=DSM 19297", "accession": "GCA_017872975.1", "taxid": 490979, "species_taxid": 490979, "relation_to_type": "type", "validated": true, "ani": 82.0001, "matched_fragments": 750, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubellimicrobium mesophilum", "strain": "strain=DSM 19309", "accession": "GCA_000600335.2", "taxid": 1123067, "species_taxid": 1123067, "relation_to_type": "type", "validated": true, "ani": 81.4191, "matched_fragments": 755, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=DSM 16684", "accession": "GCA_000442315.1", "taxid": 295419, "species_taxid": 295419, "relation_to_type": "type", "validated": true, "ani": 78.1336, "matched_fragments": 386, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia saemankumensis", "strain": "strain=DSM 100565", "accession": "GCA_900141735.1", "taxid": 1447782, "species_taxid": 1447782, "relation_to_type": "type", "validated": true, "ani": 78.067, "matched_fragments": 375, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 77.9271, "matched_fragments": 318, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": 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