{ "type": "genome", "identifier": "GCF_006170445.1", "organism": "Brevibacillus dissolubilis", "title": "Brevibacillus dissolubilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing University of Chemical Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006170445.1", "bioproject": "PRJNA224116", "biosample": "SAMN11855616", "wgs_master": "VCNA00000000.1", "refseq_category": "reference genome", "taxid": "1844116", "species_taxid": "1844116", "organism_name": "Brevibacillus dissolubilis", "infraspecific_name": "strain=CHY01", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/10", "asm_name": "ASM617044v1", "asm_submitter": "Beijing University of Chemical Technology", "gbrs_paired_asm": "GCA_006170445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/170/445/GCF_006170445.1_ASM617044v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5741269", "genome_size_ungapped": "5741269", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006170445.1-RS_2024_07_31", "annotation_date": "2024-07-31", "total_gene_count": "5006", "protein_coding_gene_count": "4701", "non_coding_gene_count": "275", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-10", "dateModified": "2019-06-10", "datePublished": "2019-06-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacillus dissolubilis" ], "sample_taxid": [ "1844116" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Chishui River, Guizhou Province" ], "sample_host_location_id": [], "data_size": "1.636 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5741269", "Number of Sequences": "26", "Longest Sequences (bp)": "904467", "N50 (bp)": "353159", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.6", "Number of CDSs": "4788", "Average Protein Length": "351.4", "Coding Ratio (%)": "87.9", "Number of rRNAs": "1", "Number of tRNAs": "251", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacillus antibioticus", "strain": "strain=TGS2-1", "accession": "GCA_005217615.1", "taxid": 2570228, "species_taxid": 2570228, "relation_to_type": "type", "validated": true, "ani": 77.5071, "matched_fragments": 123, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus reuszeri", "strain": "strain=DSM 9887", "accession": "GCA_001187725.1", "taxid": 54915, "species_taxid": 54915, "relation_to_type": "type", "validated": true, "ani": 77.436, "matched_fragments": 118, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus brevis", "strain": "strain=NCTC2611", "accession": "GCA_900637055.1", "taxid": 1393, "species_taxid": 1393, "relation_to_type": "suspected-type", "validated": true, "ani": 77.376, "matched_fragments": 140, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus migulae", "strain": "strain=CFH S0501", "accession": "GCA_004521915.1", "taxid": 1644114, "species_taxid": 1644114, "relation_to_type": "type", "validated": true, "ani": 77.2415, "matched_fragments": 165, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus choshinensis", "strain": "strain=DSM 8552", "accession": "GCA_001420695.1", "taxid": 54911, "species_taxid": 54911, "relation_to_type": "type", "validated": true, "ani": 77.2339, "matched_fragments": 131, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus invocatus", "strain": "strain=JCM 12215", "accession": "GCA_003710915.1", "taxid": 173959, "species_taxid": 173959, "relation_to_type": "type", "validated": true, "ani": 77.1752, "matched_fragments": 114, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus brevis", "strain": "strain=NRRL NRS-604", "accession": "GCA_003012835.1", "taxid": 1393, "species_taxid": 1393, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0859, "matched_fragments": 143, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus parabrevis", "strain": "strain=NRRL NRS 605", "accession": "GCA_003710905.1", "taxid": 54914, "species_taxid": 54914, "relation_to_type": "type", "validated": true, "ani": 77.0647, "matched_fragments": 156, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus brevis", "strain": "strain=DSM 30", "accession": "GCA_003385915.1", "taxid": 1393, "species_taxid": 1393, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0195, "matched_fragments": 135, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=NRRL NRS 1219", "accession": "GCA_003710885.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 76.9952, "matched_fragments": 167, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus borstelensis", "strain": "strain=NRRL NRS 818", "accession": "GCA_003710865.1", "taxid": 45462, "species_taxid": 45462, "relation_to_type": "type", "validated": true, "ani": 76.9887, "matched_fragments": 115, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus reuszeri", "strain": "strain=NBRC 15719", "accession": "GCA_006540225.1", "taxid": 54915, "species_taxid": 54915, "relation_to_type": "type", "validated": true, "ani": 76.9303, "matched_fragments": 113, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=DSM 6348", "accession": "GCA_004117055.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 76.9261, "matched_fragments": 170, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus brevis", "strain": "strain=NBRC 15304", "accession": "GCA_006539845.1", "taxid": 1393, "species_taxid": 1393, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8893, "matched_fragments": 134, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus parabrevis", "strain": "strain=NBRC 12334", "accession": "GCA_006539065.1", "taxid": 54914, "species_taxid": 54914, "relation_to_type": "type", "validated": true, "ani": 76.7077, "matched_fragments": 160, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus borstelensis", "strain": "strain=NBRC 15714", "accession": "GCA_006540165.1", "taxid": 45462, "species_taxid": 45462, "relation_to_type": "type", "validated": true, "ani": 76.6458, "matched_fragments": 112, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=NBRC 15538", "accession": "GCA_006540025.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 76.644, "matched_fragments": 165, "total_fragments": 1901, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006170445.1", "gtdb_species": "s__Brevibacillus_B sp006170445", "ani": 100.0, "matched_fragments": 1901, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000010165.1", "gtdb_species": "s__Brevibacillus brevis_D", "ani": 77.6597, "matched_fragments": 132, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "96.52", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_005217615.1", "gtdb_species": "s__Brevibacillus antibioticus", "ani": 77.4965, "matched_fragments": 122, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001187725.1", "gtdb_species": "s__Brevibacillus reuszeri", "ani": 77.4544, "matched_fragments": 118, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016811915.1", "gtdb_species": "s__Brevibacillus choshinensis_A", "ani": 77.3735, "matched_fragments": 152, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003710815.1", "gtdb_species": "s__Brevibacillus centrosporus", "ani": 77.3481, "matched_fragments": 145, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "95.98", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900637055.1", "gtdb_species": "s__Brevibacillus brevis", "ani": 77.3454, "matched_fragments": 140, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.96", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003710915.1", "gtdb_species": "s__Brevibacillus invocatus", "ani": 77.2193, "matched_fragments": 112, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004521915.1", "gtdb_species": "s__CFH-S0501 sp004521915", "ani": 77.2159, "matched_fragments": 166, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__CFH-S0501", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013284355.1", "gtdb_species": "s__Brevibacillus sp013284355", "ani": 77.1681, "matched_fragments": 135, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003710865.1", "gtdb_species": "s__Brevibacillus borstelensis", "ani": 77.0623, "matched_fragments": 115, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.53", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_003710905.1", "gtdb_species": "s__Brevibacillus parabrevis", "ani": 76.9953, "matched_fragments": 155, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_004117055.1", "gtdb_species": "s__Brevibacillus agri", "ani": 76.9249, "matched_fragments": 169, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.18", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000503775.1", "gtdb_species": "s__Brevibacillus panacihumi_A", "ani": 76.8954, "matched_fragments": 121, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000311785.1", "gtdb_species": "s__Brevibacillus_C massiliensis", "ani": 76.8258, "matched_fragments": 101, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000454065.1", "gtdb_species": "s__Brevibacillus thermoruber", "ani": 76.6633, "matched_fragments": 154, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "98.43", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_013096935.1", "gtdb_species": "s__Brevibacillus sp003388715", "ani": 76.5853, "matched_fragments": 147, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.45", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017656235.1", "gtdb_species": "s__SCSIO-07484 sp017656235", "ani": 76.5224, "matched_fragments": 93, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__SCSIO-07484", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000722545.1", "gtdb_species": "s__Paenibacillus_G tyrfis", "ani": 75.8066, "matched_fragments": 51, "total_fragments": 1901, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.295, "cell_length": 0.38, "doubling_h": 0.285, "growth_tmp": 34.715, "optimum_tmp": 39.136, "optimum_ph": 6.585, "genome_size": 5734012.398, "gc_content": 49.472, "coding_genes": 5306.866, "rRNA16S_genes": 14.666, "tRNA_genes": 121.916, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.052, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.947, "mesophilic_range_tmp": 0.857, "thermophilic_range_tmp": 0.142, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brevibacillus", "dissolubilis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }