{ "tc_result": [ { "organism_name": "Methylotetracoccus oryzae", "strain": "strain=C50C1", "accession": "GCA_006175985.1", "taxid": 1919059, "species_taxid": 1919059, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1592, "total_fragments": 1592, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylococcus geothermalis", "strain": "strain=IM1", "accession": "GCA_012769535.1", "taxid": 2681310, "species_taxid": 2681310, "relation_to_type": "type", "validated": true, "ani": 77.6025, "matched_fragments": 215, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylococcus capsulatus", "strain": "strain=ATCC 19069", "accession": "GCA_000424685.1", "taxid": 414, "species_taxid": 414, "relation_to_type": "type", "validated": true, "ani": 77.3087, "matched_fragments": 192, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloterricola oryzae", "strain": "strain=73a", "accession": "GCA_000934725.1", "taxid": 1495050, "species_taxid": 1495050, "relation_to_type": "type", "validated": true, "ani": 77.168, "matched_fragments": 177, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylococcus capsulatus", "strain": "strain=Texas", "accession": "GCA_000297615.1", "taxid": 414, "species_taxid": 414, "relation_to_type": "type", "validated": true, "ani": 77.0433, "matched_fragments": 189, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomagnum ishizawai", "strain": "strain=RS11D-Pr", "accession": "GCA_019670005.1", "taxid": 1760988, "species_taxid": 1760988, "relation_to_type": "type", "validated": true, "ani": 76.7813, "matched_fragments": 171, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomarinum vadi", "strain": "strain=IT-4", "accession": "GCA_000733935.1", "taxid": 438855, "species_taxid": 438855, "relation_to_type": "type", "validated": true, "ani": 76.3838, "matched_fragments": 53, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella telluris", "strain": "strain=G9", "accession": "GCA_014297575.1", "taxid": 2763498, "species_taxid": 2763498, "relation_to_type": "type", "validated": true, "ani": 76.2646, "matched_fragments": 63, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.2467, "matched_fragments": 74, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa marina", "strain": "strain=5811", "accession": "GCA_000223985.2", "taxid": 244573, "species_taxid": 244573, "relation_to_type": "type", "validated": true, "ani": 76.2446, "matched_fragments": 99, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 76.1095, "matched_fragments": 76, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylonatrum kenyense", "strain": "strain=AMT 1", "accession": "GCA_023195885.1", "taxid": 455253, "species_taxid": 455253, "relation_to_type": "type", "validated": true, "ani": 76.1029, "matched_fragments": 68, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis violacea", "strain": "strain=DSM 207", "accession": "GCA_016583575.1", "taxid": 13725, "species_taxid": 13725, "relation_to_type": "type", "validated": true, "ani": 76.1013, "matched_fragments": 98, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter solisilvae", "strain": "strain=R19", "accession": "GCA_016613535.2", "taxid": 2763317, "species_taxid": 2763317, "relation_to_type": "type", "validated": true, "ani": 76.0676, "matched_fragments": 78, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas soli", "strain": "strain=CGMCC 1.15905", "accession": "GCA_014643775.1", "taxid": 2269504, "species_taxid": 2269504, "relation_to_type": "type", "validated": true, "ani": 76.036, "matched_fragments": 60, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomonas koyamae", "strain": "strain=Fw12E-Y", "accession": "GCA_019669905.1", "taxid": 702114, "species_taxid": 702114, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0274, "matched_fragments": 76, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aestuarii", "strain": "strain=Hb3", "accession": "GCA_001886615.1", "taxid": 1897729, "species_taxid": 1897729, "relation_to_type": "type", "validated": true, "ani": 76.0079, "matched_fragments": 65, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitiniphilus shinanonensis", "strain": "strain=DSM 23277", "accession": "GCA_000374805.1", "taxid": 553088, "species_taxid": 553088, "relation_to_type": "type", "validated": true, "ani": 75.9873, "matched_fragments": 72, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 75.8368, "matched_fragments": 72, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomonas koyamae", "strain": "strain=JCM 16701", "accession": "GCA_001312005.1", "taxid": 702114, "species_taxid": 702114, "relation_to_type": "suspected-type", "validated": true, "ani": 75.7999, "matched_fragments": 73, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jeongeupia naejangsanensis", "strain": "strain=DSM 24253", "accession": "GCA_016865585.1", "taxid": 613195, "species_taxid": 613195, "relation_to_type": "type", "validated": true, "ani": 75.7496, "matched_fragments": 54, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 75.2511, "matched_fragments": 52, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 74.9217, "matched_fragments": 60, "total_fragments": 1592, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006175985.1", "gtdb_species": "s__Methylotetracoccus oryzae", "ani": 100.0, "matched_fragments": 1592, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylotetracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_004168015.1", "gtdb_species": "s__Methylotetracoccus sp004168015", "ani": 94.8296, "matched_fragments": 972, "total_fragments": 1592, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__EFPC2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000427385.1", "gtdb_species": "s__Methylocaldum szegediense", "ani": 76.8818, "matched_fragments": 93, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylocaldum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900155475.1", "gtdb_species": "s__Methylomagnum ishizawai", "ani": 76.8295, "matched_fragments": 164, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylomagnum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002005105.1", "gtdb_species": "s__Methylocaldum sp002005105", "ani": 76.5146, "matched_fragments": 137, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylocaldum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_009498235.1", "gtdb_species": "s__Methylospira mobilis", "ani": 76.5136, "matched_fragments": 87, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000733935.1", "gtdb_species": "s__Methylomarinum vadi", "ani": 76.3838, "matched_fragments": 53, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomarinum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011371455.1", "gtdb_species": "s__DRQN01 sp011371455", "ani": 76.2576, "matched_fragments": 52, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SZUA-152;f__SZUA-152;g__DRQN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.38", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_016583575.1", "gtdb_species": "s__Thiocystis violacea", "ani": 76.1013, "matched_fragments": 98, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015494295.1", "gtdb_species": "s__Thiogranum sp015494295", "ani": 76.0412, "matched_fragments": 83, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__DSM-19610;f__DSM-19610;g__Thiogranum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "99.47", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000374805.1", "gtdb_species": "s__Chitiniphilus shinanonensis", "ani": 75.9873, "matched_fragments": 72, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chitinibacteraceae;g__Chitiniphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008033135.1", "gtdb_species": "s__Chitinolyticbacter meiyuanensis", "ani": 75.9686, "matched_fragments": 59, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chitinibacteraceae;g__Chitinolyticbacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001312005.1", "gtdb_species": "s__Methylomonas koyamae", "ani": 75.7999, "matched_fragments": 73, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.46", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_016865585.1", "gtdb_species": "s__Jeongeupia naejangsanensis", "ani": 75.7004, "matched_fragments": 56, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chitinibacteraceae;g__Jeongeupia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002929135.1", "gtdb_species": "s__Methylomonas sp002929135", "ani": 75.4036, "matched_fragments": 52, "total_fragments": 1592, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__Methylomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" } ] }