{
    "type": "genome",
    "identifier": "GCF_006265165.1",
    "organism": "Chlorobaculum thiosulfatiphilum",
    "title": "Chlorobaculum thiosulfatiphilum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bellevue University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006265165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11845907",
        "wgs_master": "VDCH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "115852",
        "species_taxid": "115852",
        "organism_name": "Chlorobaculum thiosulfatiphilum",
        "infraspecific_name": "strain=DSM 249",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/11",
        "asm_name": "ASM626516v1",
        "asm_submitter": "Bellevue University",
        "gbrs_paired_asm": "GCA_006265165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/265/165/GCF_006265165.1_ASM626516v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2612768",
        "genome_size_ungapped": "2612768",
        "gc_percent": "57.000000",
        "replicon_count": "0",
        "scaffold_count": "87",
        "contig_count": "87",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006265165.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "2504",
        "protein_coding_gene_count": "2422",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-11",
    "dateModified": "2019-06-11",
    "datePublished": "2019-06-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chlorobaculum thiosulfatiphilum"
        ],
        "sample_taxid": [
            "115852"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: California"
        ],
        "sample_host_location_id": [],
        "data_size": "0.741 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2612768",
        "Number of Sequences": "87",
        "Longest Sequences (bp)": "321802",
        "N50 (bp)": "81206",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.8",
        "Number of CDSs": "2346",
        "Average Protein Length": "313.5",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Chlorobaculum thiosulfatiphilum",
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                "accession": "GCA_006265165.1",
                "taxid": 115852,
                "species_taxid": 115852,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 832,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_001747405.1",
                "taxid": 274537,
                "species_taxid": 274537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6496,
                "matched_fragments": 731,
                "total_fragments": 837,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobaculum tepidum",
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                "taxid": 1097,
                "species_taxid": 1097,
                "relation_to_type": "type",
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                "matched_fragments": 594,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelodictyon luteolum",
                "strain": "strain=DSM 273",
                "accession": "GCA_000012485.1",
                "taxid": 1100,
                "species_taxid": 1100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0682,
                "matched_fragments": 198,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium limicola",
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                "accession": "GCA_000020465.1",
                "taxid": 1092,
                "species_taxid": 1092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3069,
                "matched_fragments": 130,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelodictyon phaeoclathratiforme",
                "strain": "strain=BU-1",
                "accession": "GCA_000020645.1",
                "taxid": 34090,
                "species_taxid": 34090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8238,
                "matched_fragments": 91,
                "total_fragments": 837,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium phaeobacteroides",
                "strain": "strain=DSM 266",
                "accession": "GCA_000015125.1",
                "taxid": 1096,
                "species_taxid": 1096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8203,
                "matched_fragments": 80,
                "total_fragments": 837,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006265165.1",
                "gtdb_species": "s__Chlorobaculum thiosulfatiphilum",
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                "matched_fragments": 832,
                "total_fragments": 837,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004118635.1",
                "gtdb_species": "s__Chlorobaculum sp004118635",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001747405.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001602925.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_013334855.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "num_clustered_genomes": 2,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_016931495.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.111,
        "cell_length": 0.056,
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        "growth_tmp": 25.0,
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        "mesophilic_range_tmp": 0.5,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Chlorobaculum",
        "thiosulfatiphilum"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}