{ "type": "genome", "identifier": "GCF_006265175.1", "organism": "Paenibacillus hemerocallicola", "title": "Paenibacillus hemerocallicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-Sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006265175.1", "bioproject": "PRJNA224116", "biosample": "SAMN11774449", "wgs_master": "VDCQ00000000.1", "refseq_category": "reference genome", "taxid": "1172614", "species_taxid": "1172614", "organism_name": "Paenibacillus hemerocallicola", "infraspecific_name": "strain=KCTC 33185", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/11", "asm_name": "ASM626517v1", "asm_submitter": "Sun Yat-Sen University", "gbrs_paired_asm": "GCA_006265175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/265/175/GCF_006265175.1_ASM626517v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9652120", "genome_size_ungapped": "9651780", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "167", "contig_count": "167", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006265175.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "8235", "protein_coding_gene_count": "8044", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-11", "dateModified": "2019-06-11", "datePublished": "2019-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus hemerocallicola" ], "sample_taxid": [ "1172614" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "2.746 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9652120", "Number of Sequences": "167", "Longest Sequences (bp)": "309382", "N50 (bp)": "100180", "Gap Ratio (%)": "0.003523", "GCcontent (%)": "54.1", "Number of CDSs": "8243", "Average Protein Length": "327.6", "Coding Ratio (%)": "83.9", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus hemerocallicola", "strain": "strain=KCTC 33185", "accession": "GCA_006265175.1", "taxid": 1172614, "species_taxid": 1172614, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3135, "total_fragments": 3143, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus mesophilus", "strain": "strain=SYSU K30004", "accession": "GCA_005938385.1", "taxid": 2582849, "species_taxid": 2582849, "relation_to_type": "type", "validated": true, "ani": 84.0166, "matched_fragments": 1797, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ginsengarvi", "strain": "strain=KCTC 13059", "accession": "GCA_003626695.1", "taxid": 400777, "species_taxid": 400777, "relation_to_type": "type", "validated": true, "ani": 80.178, "matched_fragments": 1228, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus flagellatus", "strain": "strain=DXL2", "accession": "GCA_003217775.1", "taxid": 2211139, "species_taxid": 2211139, "relation_to_type": "type", "validated": true, "ani": 79.8409, "matched_fragments": 978, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus oceani", "strain": "strain=IB182363", "accession": "GCA_014705615.1", "taxid": 2772510, "species_taxid": 2772510, "relation_to_type": "type", "validated": true, "ani": 79.2045, "matched_fragments": 945, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus puerhi", "strain": "strain=SJY2", "accession": "GCA_009846885.1", "taxid": 2692622, "species_taxid": 2692622, "relation_to_type": "type", "validated": true, "ani": 77.0552, "matched_fragments": 204, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella xylanilytica", "strain": "strain=DSM 25239", "accession": "GCA_014212175.1", "taxid": 557555, "species_taxid": 557555, "relation_to_type": "type", "validated": true, "ani": 76.8082, "matched_fragments": 215, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus caui", "strain": "strain=81-11", "accession": "GCA_019904135.1", "taxid": 2873927, "species_taxid": 2873927, "relation_to_type": "type", "validated": true, "ani": 76.7191, "matched_fragments": 87, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella candidum", "strain": "strain=18JY8-7", "accession": "GCA_003713065.1", "taxid": 2674991, "species_taxid": 2674991, "relation_to_type": "type", "validated": true, "ani": 76.7103, "matched_fragments": 161, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella zeiphila", "strain": "strain=CBP-2801", "accession": "GCA_014212055.1", "taxid": 2761120, "species_taxid": 2761120, "relation_to_type": "type", "validated": true, "ani": 76.7045, "matched_fragments": 238, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus cisolokensis", "strain": "strain=LC2-13A", "accession": "GCA_018403665.1", "taxid": 1658519, "species_taxid": 1658519, "relation_to_type": "type", "validated": true, "ani": 76.6818, "matched_fragments": 214, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lycopersici", "strain": "strain=12200R-189", "accession": "GCA_010119935.1", "taxid": 2704462, "species_taxid": 2704462, "relation_to_type": "type", "validated": true, "ani": 76.6779, "matched_fragments": 240, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus artemisiicola", "strain": "strain=MWE-103", "accession": "GCA_017652985.1", "taxid": 1172618, "species_taxid": 1172618, "relation_to_type": "type", "validated": true, "ani": 76.6657, "matched_fragments": 259, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus darwinianus", "strain": "strain=Br", "accession": "GCA_000598065.1", "taxid": 1380763, 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