{ "type": "genome", "identifier": "GCF_006265225.1", "organism": "Tamlana fucoidanivorans", "title": "Tamlana fucoidanivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shantou University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006265225.1", "bioproject": "PRJNA224116", "biosample": "SAMN11845908", "wgs_master": "VDCS00000000.1", "refseq_category": "na", "taxid": "2583814", "species_taxid": "2583814", "organism_name": "Tamlana fucoidanivorans", "infraspecific_name": "strain=CW2-9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/11", "asm_name": "ASM626522v1", "asm_submitter": "Shantou University", "gbrs_paired_asm": "GCA_006265225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/265/225/GCF_006265225.1_ASM626522v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4022701", "genome_size_ungapped": "4022701", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "152", "contig_count": "152", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006265225.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3424", "protein_coding_gene_count": "3347", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-11", "dateModified": "2019-06-11", "datePublished": "2019-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Tamlana fucoidanivorans" ], "sample_taxid": [ "2583814" ], "sample_host_organism": [ "algae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fujian" ], "sample_host_location_id": [], "data_size": "1.130 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4022701", "Number of Sequences": "152", "Longest Sequences (bp)": "385075", "N50 (bp)": "249398", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.3", "Number of CDSs": "3329", "Average Protein Length": "360.1", "Coding Ratio (%)": "89.4", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 78.4797, "matched_fragments": 379, "total_fragments": 1307, "ani_threshold": 95, 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"Algibacter onchidii", "strain": "strain=XY-114", "accession": "GCA_004804355.1", "taxid": 2562860, "species_taxid": 2562860, "relation_to_type": "type", "validated": true, "ani": 78.3659, "matched_fragments": 429, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 78.3638, "matched_fragments": 403, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 78.1924, "matched_fragments": 348, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 78.1884, "matched_fragments": 387, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.1375, "matched_fragments": 405, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 78.1276, "matched_fragments": 345, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, 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"total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 77.8595, "matched_fragments": 372, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 77.8447, "matched_fragments": 211, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana nanhaiensis", "strain": "strain=FHC16", "accession": "GCA_000943555.1", "taxid": 1382798, "species_taxid": 1382798, "relation_to_type": "type", "validated": true, "ani": 77.8231, "matched_fragments": 329, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 77.727, "matched_fragments": 310, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana marina", "strain": "strain=JLT21", "accession": "GCA_011762485.1", "taxid": 1565536, "species_taxid": 1565536, "relation_to_type": "type", "validated": true, "ani": 77.5317, "matched_fragments": 306, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 77.4785, "matched_fragments": 251, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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