{
    "type": "genome",
    "identifier": "GCF_006265245.1",
    "organism": "Prosthecochloris vibrioformis",
    "title": "Prosthecochloris vibrioformis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bellevue University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006265245.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11845911",
        "wgs_master": "VDCI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1098",
        "species_taxid": "1098",
        "organism_name": "Prosthecochloris vibrioformis",
        "infraspecific_name": "strain=DSM 260",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/11",
        "asm_name": "ASM626524v1",
        "asm_submitter": "Bellevue University",
        "gbrs_paired_asm": "GCA_006265245.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/265/245/GCF_006265245.1_ASM626524v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2305678",
        "genome_size_ungapped": "2305678",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "75",
        "contig_count": "75",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006265245.1-RS_2024_08_05",
        "annotation_date": "2024-08-05",
        "total_gene_count": "2188",
        "protein_coding_gene_count": "2071",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-11",
    "dateModified": "2019-06-11",
    "datePublished": "2019-06-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prosthecochloris vibrioformis"
        ],
        "sample_taxid": [
            "1098"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "0.658 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2305678",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "598147",
        "N50 (bp)": "293850",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.1",
        "Number of CDSs": "2107",
        "Average Protein Length": "326.7",
        "Coding Ratio (%)": "89.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Prosthecochloris vibrioformis",
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                "accession": "GCA_006265245.1",
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                "species_taxid": 1098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 744,
                "total_fragments": 744,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prosthecochloris aestuarii",
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                "accession": "GCA_000020625.1",
                "taxid": 1102,
                "species_taxid": 1102,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7446,
                "matched_fragments": 135,
                "total_fragments": 744,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobaculum limnaeum",
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                "accession": "GCA_001747405.1",
                "taxid": 274537,
                "species_taxid": 274537,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prosthecochloris marina",
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                "accession": "GCA_003182595.1",
                "taxid": 2017681,
                "species_taxid": 2017681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3614,
                "matched_fragments": 72,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobium ferrooxidans",
                "strain": "strain=DSM 13031",
                "accession": "GCA_000168715.1",
                "taxid": 84205,
                "species_taxid": 84205,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2192,
                "matched_fragments": 54,
                "total_fragments": 744,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobaculum tepidum",
                "strain": "strain=TLS",
                "accession": "GCA_000006985.1",
                "taxid": 1097,
                "species_taxid": 1097,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1853,
                "matched_fragments": 78,
                "total_fragments": 744,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorobaculum thiosulfatiphilum",
                "strain": "strain=DSM 249",
                "accession": "GCA_006265165.1",
                "taxid": 115852,
                "species_taxid": 115852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7571,
                "matched_fragments": 78,
                "total_fragments": 744,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_006265245.1",
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                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "98.23",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002113825.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Prosthecochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "99.15",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003344365.2",
                "gtdb_species": "s__Prosthecochloris ethylica",
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                "total_fragments": 744,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Prosthecochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000020625.1",
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                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903824045.1",
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            },
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                "status": "-"
            },
            {
                "accession": "GCA_001602925.1",
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                "mean_intra_species_ani": "N/A",
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            },
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            {
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "vibrioformis"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}