{ "type": "genome", "identifier": "GCF_006335005.1", "organism": "Nocardioides albidus", "title": "Nocardioides albidus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006335005.1", "bioproject": "PRJNA224116", "biosample": "SAMN11960009", "wgs_master": "VDMP00000000.1", "refseq_category": "reference genome", "taxid": "1517589", "species_taxid": "1517589", "organism_name": "Nocardioides albidus", "infraspecific_name": "strain=CCTCC AB 2015297", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/12", "asm_name": "ASM633500v1", "asm_submitter": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "gbrs_paired_asm": "GCA_006335005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/335/005/GCF_006335005.1_ASM633500v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4483902", "genome_size_ungapped": "4466769", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006335005.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4422", "protein_coding_gene_count": "4281", "non_coding_gene_count": "50", "pubmed_id": "26530636" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-12", "dateModified": "2019-06-12", "datePublished": "2019-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides albidus" ], "sample_taxid": [ "1517589" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.184 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4483902", "Number of Sequences": "27", "Longest Sequences (bp)": "638563", "N50 (bp)": "247411", "Gap Ratio (%)": "0.382457", "GCcontent (%)": "71.9", "Number of CDSs": "4291", "Average Protein Length": "320.4", "Coding Ratio (%)": "92.0", "Number of rRNAs": "1", "Number of tRNAs": "56", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides albidus", "strain": "strain=CCTCC AB 2015297", "accession": "GCA_006335005.1", "taxid": 1517589, "species_taxid": 1517589, 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86.5897, "matched_fragments": 1105, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humi", "strain": "strain=DCY24", "accession": "GCA_006494775.1", "taxid": 449461, "species_taxid": 449461, "relation_to_type": "type", "validated": true, "ani": 86.169, "matched_fragments": 1070, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides carbamazepini", "strain": "strain=CBZ_1", "accession": "GCA_024614185.1", "taxid": 2854259, "species_taxid": 2854259, "relation_to_type": "type", "validated": true, "ani": 86.0048, "matched_fragments": 1071, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides caeni", "strain": "strain=DSM 23134", "accession": "GCA_004912195.1", "taxid": 574700, "species_taxid": 574700, "relation_to_type": "type", "validated": true, "ani": 83.4184, "matched_fragments": 871, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 81.5316, "matched_fragments": 760, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 81.2641, "matched_fragments": 768, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 80.1138, "matched_fragments": 632, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 80.0529, "matched_fragments": 657, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006335005.1", "gtdb_species": "s__Nocardioides albidus", "ani": 100.0, "matched_fragments": 1478, "total_fragments": 1482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013409625.1", "gtdb_species": 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