{ "type": "genome", "identifier": "GCF_006335125.1", "organism": "Deinococcus radiopugnans ATCC 19172", "title": "Deinococcus radiopugnans ATCC 19172", "description": "na", "data type": "Genome sequencing and assembly", "organization": "maclea_lab", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006335125.1", "bioproject": "PRJNA224116", "biosample": "SAMN11962656", "wgs_master": "VDMO00000000.1", "refseq_category": "na", "taxid": "585398", "species_taxid": "57497", "organism_name": "Deinococcus radiopugnans ATCC 19172", "infraspecific_name": "strain=ATCC 19172", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/12", "asm_name": "ASM633512v1", "asm_submitter": "maclea_lab", "gbrs_paired_asm": "GCA_006335125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/335/125/GCF_006335125.1_ASM633512v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4326682", "genome_size_ungapped": "4326682", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "91", "contig_count": "91", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006335125.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4193", "protein_coding_gene_count": "4095", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-12", "dateModified": "2019-06-12", "datePublished": "2019-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus radiopugnans ATCC 19172" ], "sample_taxid": [ "585398" ], "sample_host_organism": [ "Melanogrammus aeglefinus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Massachusetts, Cambridge" ], "sample_host_location_id": [], "data_size": "1.193 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4326682", "Number of Sequences": "91", "Longest Sequences (bp)": "356294", "N50 (bp)": "173302", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.1", "Number of CDSs": "4181", "Average Protein Length": "302.8", "Coding Ratio (%)": "87.8", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus radiopugnans", "strain": "strain=ATCC 19172", "accession": "GCA_006335125.1", "taxid": 57497, "species_taxid": 57497, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus frigens", "strain": "strain=DSM 12807", "accession": "GCA_000701425.1", "taxid": 249403, "species_taxid": 249403, "relation_to_type": "type", "validated": true, "ani": 86.3244, "matched_fragments": 920, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus humi", "strain": "strain=JCM 17915", "accession": "GCA_014647275.1", "taxid": 662880, "species_taxid": 662880, "relation_to_type": "type", "validated": true, "ani": 86.2321, "matched_fragments": 1073, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus humi", "strain": "strain=DSM 27939", "accession": "GCA_014201875.1", "taxid": 662880, "species_taxid": 662880, "relation_to_type": "type", "validated": true, "ani": 86.1898, "matched_fragments": 1084, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus aquiradiocola", "strain": "strain=JCM 14371", "accession": "GCA_014646915.1", "taxid": 393059, "species_taxid": 393059, "relation_to_type": "type", "validated": true, "ani": 77.7609, "matched_fragments": 449, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus amyloliquefaciens", "strain": "strain=YIM 77409", "accession": "GCA_000744885.1", "taxid": 1449080, "species_taxid": 1449080, "relation_to_type": "type", "validated": true, "ani": 75.9492, "matched_fragments": 52, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus filiformis", "strain": "strain=ATCC 43280", "accession": "GCA_000771745.2", "taxid": 276, "species_taxid": 276, "relation_to_type": "type", "validated": true, "ani": 75.7507, "matched_fragments": 50, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermophilus", "strain": "strain=JCM10941", "accession": "GCA_019973715.1", "taxid": 274, "species_taxid": 274, "relation_to_type": "type", "validated": true, "ani": 75.7187, "matched_fragments": 52, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermophilus", "strain": "strain=HB8", "accession": "GCA_000091545.1", "taxid": 274, "species_taxid": 274, "relation_to_type": "type", "validated": true, "ani": 75.7156, "matched_fragments": 52, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006335125.1", "gtdb_species": "s__Deinococcus radiopugnans", "ani": 100.0, "matched_fragments": 1397, "total_fragments": 1399, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", 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