{
    "type": "genome",
    "identifier": "GCF_006345825.1",
    "organism": "Paenibacillus paridis",
    "title": "Paenibacillus paridis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Yunnan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006345825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11812021",
        "wgs_master": "VCIX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2583376",
        "species_taxid": "2583376",
        "organism_name": "Paenibacillus paridis",
        "infraspecific_name": "strain=py1325",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/14",
        "asm_name": "ASM634582v1",
        "asm_submitter": "Yunnan University",
        "gbrs_paired_asm": "GCA_006345825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/345/825/GCF_006345825.1_ASM634582v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7796941",
        "genome_size_ungapped": "7796534",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "92",
        "contig_count": "92",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006345825.1-RS_2024_03_27",
        "annotation_date": "2024-03-27",
        "total_gene_count": "6467",
        "protein_coding_gene_count": "6299",
        "non_coding_gene_count": "87",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-14",
    "dateModified": "2019-06-14",
    "datePublished": "2019-06-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus paridis"
        ],
        "sample_taxid": [
            "2583376"
        ],
        "sample_host_organism": [
            "Paris polyphylla var. yunnanensis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Yunnan province"
        ],
        "sample_host_location_id": [],
        "data_size": "2.220 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 58.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7796941",
        "Number of Sequences": "92",
        "Longest Sequences (bp)": "2335344",
        "N50 (bp)": "308107",
        "Gap Ratio (%)": "0.006143",
        "GCcontent (%)": "47.7",
        "Number of CDSs": "6455",
        "Average Protein Length": "350.8",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paenibacillus paridis",
                "strain": "strain=py1325",
                "accession": "GCA_006345825.1",
                "taxid": 2583376,
                "species_taxid": 2583376,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2561,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus luteus",
                "strain": "strain=R-3",
                "accession": "GCA_006542765.1",
                "taxid": 2545753,
                "species_taxid": 2545753,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.6201,
                "matched_fragments": 2178,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus sinopodophylli",
                "strain": "strain=CCTCC AB 2016047",
                "accession": "GCA_005930355.1",
                "taxid": 1837342,
                "species_taxid": 1837342,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6315,
                "matched_fragments": 1002,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus endophyticus",
                "strain": "strain=CECT 8234",
                "accession": "GCA_014192395.1",
                "taxid": 1294268,
                "species_taxid": 1294268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4776,
                "matched_fragments": 1060,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus castaneae",
                "strain": "strain=DSM 19417",
                "accession": "GCA_002884445.1",
                "taxid": 474957,
                "species_taxid": 474957,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8345,
                "matched_fragments": 629,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus prosopidis",
                "strain": "strain=CECT 7506",
                "accession": "GCA_003337375.1",
                "taxid": 630520,
                "species_taxid": 630520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8133,
                "matched_fragments": 638,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus alkaliterrae",
                "strain": "strain=DSM 17040",
                "accession": "GCA_021532375.1",
                "taxid": 320909,
                "species_taxid": 320909,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7655,
                "matched_fragments": 572,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus harenae",
                "strain": "strain=DSM 16969",
                "accession": "GCA_000422465.1",
                "taxid": 306543,
                "species_taxid": 306543,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0853,
                "matched_fragments": 583,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus agri",
                "strain": "strain=JW14",
                "accession": "GCA_013359945.1",
                "taxid": 2744309,
                "species_taxid": 2744309,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0102,
                "matched_fragments": 122,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cohnella herbarum",
                "strain": "strain=MFER-1",
                "accession": "GCA_012849095.1",
                "taxid": 2728023,
                "species_taxid": 2728023,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9963,
                "matched_fragments": 143,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus faecalis",
                "strain": "strain=Marseille-P3787",
                "accession": "GCA_900289175.1",
                "taxid": 2079532,
                "species_taxid": 2079532,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7788,
                "matched_fragments": 52,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus timonensis",
                "strain": "strain=DSM 16943",
                "accession": "GCA_022427145.1",
                "taxid": 225915,
                "species_taxid": 225915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1923,
                "matched_fragments": 68,
                "total_fragments": 2565,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 58.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006345825.1",
                "gtdb_species": "s__Paenibacillus_C paridis",
                "ani": 100.0,
                "matched_fragments": 2561,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_006542765.1",
                "gtdb_species": "s__Paenibacillus_C luteus",
                "ani": 93.6149,
                "matched_fragments": 2179,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005930355.1",
                "gtdb_species": "s__Paenibacillus_C sinopodophylli",
                "ani": 81.6246,
                "matched_fragments": 1003,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014192395.1",
                "gtdb_species": "s__Paenibacillus_C endophyticus",
                "ani": 81.4776,
                "matched_fragments": 1060,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001956095.1",
                "gtdb_species": "s__Paenibacillus_C sp001956095",
                "ani": 81.4718,
                "matched_fragments": 1065,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001682865.1",
                "gtdb_species": "s__Paenibacillus_C sp001682865",
                "ani": 81.3061,
                "matched_fragments": 1086,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001956295.1",
                "gtdb_species": "s__Paenibacillus_C sp001956295",
                "ani": 81.2748,
                "matched_fragments": 960,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012935325.2",
                "gtdb_species": "s__Paenibacillus_C sp012935325",
                "ani": 81.2678,
                "matched_fragments": 1036,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001428245.1",
                "gtdb_species": "s__Paenibacillus_C sp001428245",
                "ani": 81.1957,
                "matched_fragments": 771,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003217535.1",
                "gtdb_species": "s__Paenibacillus_C sp003217535",
                "ani": 81.1245,
                "matched_fragments": 826,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900106745.1",
                "gtdb_species": "s__Paenibacillus_Z sp900106745",
                "ani": 76.7583,
                "matched_fragments": 186,
                "total_fragments": 2565,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.187,
        "cell_length": 0.433,
        "doubling_h": 0.565,
        "growth_tmp": 30.106,
        "optimum_tmp": 31.323,
        "optimum_ph": 7.238,
        "genome_size": 6197949.921,
        "gc_content": 50.283,
        "coding_genes": 5381.029,
        "rRNA16S_genes": 10.237,
        "tRNA_genes": 93.313,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.918,
        "range_salinity": 0.0,
        "facultative_respiration": 0.347,
        "anaerobic_respiration": 0.007,
        "aerobic_respiration": 0.645,
        "mesophilic_range_tmp": 0.9,
        "thermophilic_range_tmp": 0.033,
        "psychrophilic_range_tmp": 0.066,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "paridis"
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}