{ "type": "genome", "identifier": "GCF_006351005.1", "organism": "Miniimonas arenae", "title": "Miniimonas arenae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jeju National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006351005.1", "bioproject": "PRJNA224116", "biosample": "SAMN11997792", "wgs_master": "VENP00000000.1", "refseq_category": "reference genome", "taxid": "676201", "species_taxid": "676201", "organism_name": "Miniimonas arenae", "infraspecific_name": "strain=KCTC 19750", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/15", "asm_name": "ASM635100v1", "asm_submitter": "Jeju National University", "gbrs_paired_asm": "GCA_006351005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/351/005/GCF_006351005.1_ASM635100v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3402690", "genome_size_ungapped": "3402690", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "148", "contig_count": "148", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006351005.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3041", "protein_coding_gene_count": "2913", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-15", "dateModified": "2019-06-15", "datePublished": "2019-06-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Miniimonas arenae" ], "sample_taxid": [ "676201" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Nagasaki prefecture" ], "sample_host_location_id": [], "data_size": "0.894 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3402690", "Number of Sequences": "148", "Longest Sequences (bp)": "221872", "N50 (bp)": "57666", "Gap Ratio (%)": "0.000029", "GCcontent (%)": "73.6", "Number of CDSs": "2920", "Average Protein Length": "341.7", "Coding Ratio (%)": "88.0", "Number of rRNAs": "1", "Number of tRNAs": "49", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Beutenbergia cavernae", "strain": "strain=DSM 12333", "accession": "GCA_000023105.1", "taxid": 84757, "species_taxid": 84757, "relation_to_type": "type", "validated": true, "ani": 78.4267, "matched_fragments": 520, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 78.359, "matched_fragments": 474, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 78.251, "matched_fragments": 476, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 78.241, "matched_fragments": 439, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas iranensis", "strain": "strain=NBRC 101100", "accession": "GCA_001552375.1", "taxid": 76862, "species_taxid": 76862, "relation_to_type": "type", "validated": true, "ani": 78.2067, "matched_fragments": 479, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudactinotalea terrae", "strain": "strain=KACC 16542", "accession": "GCA_009733845.1", "taxid": 1743262, "species_taxid": 1743262, "relation_to_type": "type", "validated": true, "ani": 78.1376, "matched_fragments": 394, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=NBRC 108568", "accession": "GCA_016863455.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 78.0889, "matched_fragments": 437, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=NBRC 3753", "accession": "GCA_006538745.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 78.0849, "matched_fragments": 496, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 78.0722, "matched_fragments": 417, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=DSM 25478", "accession": "GCA_002797595.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 78.0684, "matched_fragments": 444, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9854, "matched_fragments": 492, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9623, "matched_fragments": 501, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas shaoxiangyii", "strain": "strain=Z28", "accession": "GCA_004798685.1", "taxid": 2566013, "species_taxid": 2566013, "relation_to_type": "type", "validated": true, "ani": 77.9554, "matched_fragments": 483, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 77.9315, "matched_fragments": 496, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium marinum", "strain": "strain=NBRC 110994", "accession": "GCA_020551945.1", "taxid": 1638992, "species_taxid": 1638992, "relation_to_type": "type", "validated": true, "ani": 77.7946, "matched_fragments": 454, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania suaedae", "strain": "strain=LR1S40", "accession": "GCA_021049265.1", "taxid": 2897774, "species_taxid": 2897774, "relation_to_type": "type", "validated": true, "ani": 77.7753, "matched_fragments": 320, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella glacieicola", "strain": "strain=T3246-1", "accession": "GCA_004353825.1", "taxid": 2518684, "species_taxid": 2518684, "relation_to_type": "type", "validated": true, "ani": 77.7347, "matched_fragments": 380, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 77.7275, "matched_fragments": 411, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia enterophila", "strain": "strain=DSM 43852", "accession": "GCA_001692445.1", "taxid": 43678, "species_taxid": 43678, "relation_to_type": "type", "validated": true, "ani": 77.6483, "matched_fragments": 408, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora citrea", "strain": "strain=ATCC 15908", "accession": "GCA_013004695.1", "taxid": 43677, "species_taxid": 43677, "relation_to_type": "type", "validated": true, "ani": 77.645, "matched_fragments": 445, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella aeris", "strain": "strain=CIP 111667", "accession": "GCA_902703175.1", "taxid": 2761496, "species_taxid": 2761496, "relation_to_type": "type", "validated": true, "ani": 77.5145, "matched_fragments": 415, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora citrea", "strain": "strain=JCM 3051", "accession": "GCA_014647735.1", "taxid": 43677, "species_taxid": 43677, "relation_to_type": "type", "validated": true, "ani": 77.4583, "matched_fragments": 475, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium halotolerans", "strain": "strain=MASK1Z-5", "accession": "GCA_016623465.1", "taxid": 2795215, "species_taxid": 2795215, "relation_to_type": "type", "validated": true, "ani": 76.8221, "matched_fragments": 286, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium halotolerans subsp. kimchii", "strain": "strain=CBA3105", "accession": "GCA_020792675.1", "taxid": 2887346, "species_taxid": 2795215, "relation_to_type": "type", "validated": true, "ani": 76.7962, "matched_fragments": 288, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces daqingensis", "strain": "strain=CGMCC 4.7178", "accession": "GCA_014645895.1", "taxid": 1472640, "species_taxid": 1472640, "relation_to_type": "type", "validated": true, "ani": 76.1595, "matched_fragments": 237, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila yanglinensis", "strain": "strain=CGMCC 4.2023", "accession": "GCA_900107965.1", "taxid": 310779, "species_taxid": 310779, "relation_to_type": "type", "validated": true, "ani": 76.0202, "matched_fragments": 352, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces armeniacus", "strain": "strain=ATCC 15676", "accession": "GCA_003355155.1", "taxid": 83291, "species_taxid": 83291, "relation_to_type": "type", "validated": true, "ani": 75.8923, "matched_fragments": 334, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006351005.1", "gtdb_species": "s__Miniimonas arenae", "ani": 100.0, "matched_fragments": 1054, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Miniimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.18", "min_intra_species_ani": "97.40", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_004786095.1", "gtdb_species": "s__Serinibacter_A arcticus", "ani": 80.7059, "matched_fragments": 580, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Serinibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003121705.1", "gtdb_species": "s__Serinibacter_A sp003121705", "ani": 80.7014, "matched_fragments": 633, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Serinibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003751805.1", "gtdb_species": "s__Salana multivorans", "ani": 80.5379, "matched_fragments": 617, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Salana", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002563925.1", "gtdb_species": "s__Serinibacter salmoneus", "ani": 79.2274, "matched_fragments": 435, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Serinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009733795.1", "gtdb_species": "s__Pseudactinotalea caeni", "ani": 78.5947, "matched_fragments": 483, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Pseudactinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000708885.1", "gtdb_species": "s__Cellulomonas sp000708885", "ani": 78.2799, "matched_fragments": 413, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013409475.1", "gtdb_species": "s__Cellulomonas hominis_B", "ani": 78.1463, "matched_fragments": 460, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001552375.1", "gtdb_species": "s__Cellulomonas iranensis", "ani": 78.1129, "matched_fragments": 492, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002797595.1", "gtdb_species": "s__Sediminihabitans luteus", "ani": 78.0766, "matched_fragments": 444, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sediminihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001692445.1", "gtdb_species": "s__Oerskovia enterophila", "ani": 77.6867, "matched_fragments": 403, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Oerskovia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_012514545.1", "gtdb_species": "s__Actinotalea sp012514545", "ani": 77.2939, "matched_fragments": 359, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014645895.1", "gtdb_species": "s__Streptomyces daqingensis", "ani": 76.1534, "matched_fragments": 238, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.38", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.13, "cell_length": 0.332, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 28.75, "optimum_ph": 7.25, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Miniimonas", "arenae" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }