{
    "type": "genome",
    "identifier": "GCF_006351925.1",
    "organism": "Clostridium thermarum",
    "title": "Clostridium thermarum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Sun Yat-Sen University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006351925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11964582",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1716543",
        "species_taxid": "1716543",
        "organism_name": "Clostridium thermarum",
        "infraspecific_name": "strain=SYSU GA15002",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/17",
        "asm_name": "ASM635192v1",
        "asm_submitter": "Sun Yat-Sen University",
        "gbrs_paired_asm": "GCA_006351925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/351/925/GCF_006351925.1_ASM635192v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3805212",
        "genome_size_ungapped": "3805212",
        "gc_percent": "37.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006351925.1-RS_2024_04_14",
        "annotation_date": "2024-04-14",
        "total_gene_count": "3611",
        "protein_coding_gene_count": "3430",
        "non_coding_gene_count": "121",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-17",
    "dateModified": "2019-06-17",
    "datePublished": "2019-06-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium thermarum"
        ],
        "sample_taxid": [
            "1716543"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Yunnan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.066 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3805212",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3805212",
        "N50 (bp)": "3805212",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "3507",
        "Average Protein Length": "310.8",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "33",
        "Number of tRNAs": "82",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Clostridium thermarum",
                "strain": "strain=SYSU GA15002",
                "accession": "GCA_006351925.1",
                "taxid": 1716543,
                "species_taxid": 1716543,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1268,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Clostridium thermarum",
                "strain": "strain=SYSU GA15002",
                "accession": "GCA_010367605.1",
                "taxid": 1716543,
                "species_taxid": 1716543,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9503,
                "matched_fragments": 1183,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Clostridium isatidis",
                "strain": "strain=DSM 15098",
                "accession": "GCA_002285495.1",
                "taxid": 182773,
                "species_taxid": 182773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4446,
                "matched_fragments": 73,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium fallax",
                "strain": "strain=NCTC8380",
                "accession": "GCA_900461065.1",
                "taxid": 1533,
                "species_taxid": 1533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9512,
                "matched_fragments": 87,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium swellfunianum",
                "strain": "strain=CICC 10730",
                "accession": "GCA_023656515.1",
                "taxid": 1367462,
                "species_taxid": 1367462,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.764,
                "matched_fragments": 93,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloimpatiens massiliensis",
                "strain": "strain=Mt13",
                "accession": "GCA_900184255.1",
                "taxid": 1658110,
                "species_taxid": 1658110,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.985,
                "matched_fragments": 80,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium oryzae",
                "strain": "strain=DSM 28571",
                "accession": "GCA_002029235.1",
                "taxid": 1450648,
                "species_taxid": 1450648,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4925,
                "matched_fragments": 93,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium polyendosporum",
                "strain": "strain=JCM 30710",
                "accession": "GCA_018332455.1",
                "taxid": 69208,
                "species_taxid": 69208,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1337,
                "matched_fragments": 58,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium uliginosum",
                "strain": "strain=DSM 12992",
                "accession": "GCA_900112485.1",
                "taxid": 119641,
                "species_taxid": 119641,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6973,
                "matched_fragments": 55,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium simiarum",
                "strain": "strain=MSJ-4",
                "accession": "GCA_018919175.1",
                "taxid": 2841506,
                "species_taxid": 2841506,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6367,
                "matched_fragments": 70,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium fallax",
                "strain": "strain=DSM 2631",
                "accession": "GCA_900129365.1",
                "taxid": 1533,
                "species_taxid": 1533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4744,
                "matched_fragments": 73,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium tepidum",
                "strain": "strain=IEH 97212",
                "accession": "GCA_002008345.1",
                "taxid": 1962263,
                "species_taxid": 1962263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3302,
                "matched_fragments": 66,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium celatum",
                "strain": "strain=DSM 1785",
                "accession": "GCA_000320405.1",
                "taxid": 36834,
                "species_taxid": 36834,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0703,
                "matched_fragments": 51,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium thailandense",
                "strain": "strain=PL3",
                "accession": "GCA_019207025.1",
                "taxid": 2794346,
                "species_taxid": 2794346,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8073,
                "matched_fragments": 57,
                "total_fragments": 1268,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006351925.1",
                "gtdb_species": "s__UBA3947 sp006351925",
                "ani": 100.0,
                "matched_fragments": 1267,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__UBA3947",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
                "min_intra_species_ani": "96.28",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002285495.1",
                "gtdb_species": "s__Clostridium isatidis",
                "ani": 80.3548,
                "matched_fragments": 73,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "99.19",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003614235.1",
                "gtdb_species": "s__Clostridium_H haemolyticum",
                "ani": 79.3007,
                "matched_fragments": 71,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_H",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "97.38",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_017100085.1",
                "gtdb_species": "s__Clostridium_H botulinum_A",
                "ani": 79.279,
                "matched_fragments": 61,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_H",
                "ani_circumscription_radius": 95.0162,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_001038625.1",
                "gtdb_species": "s__Clostridium_AM carboxidivorans",
                "ani": 79.165,
                "matched_fragments": 83,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AM",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900167505.1",
                "gtdb_species": "s__F0540 sp900167505",
                "ani": 79.0539,
                "matched_fragments": 97,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__F0540",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "98.87",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000753435.1",
                "gtdb_species": "s__Clostridium_L amazonitimonense",
                "ani": 78.9281,
                "matched_fragments": 72,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_L",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900095445.1",
                "gtdb_species": "s__UBA3947 sp900095445",
                "ani": 78.6329,
                "matched_fragments": 205,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__UBA3947",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012523855.1",
                "gtdb_species": "s__UBA3947 sp003541575",
                "ani": 78.2205,
                "matched_fragments": 167,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__UBA3947",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "99.30",
                "mean_intra_species_af": "0.72",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001889325.1",
                "gtdb_species": "s__Clostridium_F botulinum_A",
                "ani": 78.0522,
                "matched_fragments": 77,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.92",
                "min_intra_species_ani": "95.51",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 52,
                "status": "-"
            },
            {
                "accession": "GCA_002385545.1",
                "gtdb_species": "s__UBA3947 sp002385545",
                "ani": 77.7636,
                "matched_fragments": 170,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__UBA3947",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002029235.1",
                "gtdb_species": "s__Clostridium_AE oryzae",
                "ani": 77.5258,
                "matched_fragments": 92,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AE",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018332455.1",
                "gtdb_species": "s__Clostridium_AR polyendosporum",
                "ani": 77.1355,
                "matched_fragments": 58,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AR",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900142075.1",
                "gtdb_species": "s__Clostridium_AA amylolyticum",
                "ani": 77.05,
                "matched_fragments": 76,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AA",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004353185.1",
                "gtdb_species": "s__Clostridium cuniculi",
                "ani": 76.7621,
                "matched_fragments": 55,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.75",
                "min_intra_species_ani": "97.60",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_900112485.1",
                "gtdb_species": "s__Clostridium uliginosum",
                "ani": 76.6973,
                "matched_fragments": 55,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009928445.1",
                "gtdb_species": "s__Clostridium_AR sp009928445",
                "ani": 76.6462,
                "matched_fragments": 81,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AR",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129365.1",
                "gtdb_species": "s__Clostridium_AH fallax",
                "ani": 76.4744,
                "matched_fragments": 73,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AH",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002008345.1",
                "gtdb_species": "s__Clostridium_F tepidum",
                "ani": 76.3386,
                "matched_fragments": 67,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.70",
                "min_intra_species_ani": "99.54",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000320405.1",
                "gtdb_species": "s__Clostridium celatum",
                "ani": 76.0703,
                "matched_fragments": 51,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.48",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_019207025.1",
                "gtdb_species": "s__Clostridium_AM sp019207025",
                "ani": 75.9068,
                "matched_fragments": 57,
                "total_fragments": 1268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AM",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.16,
        "cell_length": 0.434,
        "doubling_h": 0.353,
        "growth_tmp": 33.457,
        "optimum_tmp": 35.173,
        "optimum_ph": 6.947,
        "genome_size": 4165901.003,
        "gc_content": 29.49,
        "coding_genes": 3796.985,
        "rRNA16S_genes": 9.374,
        "tRNA_genes": 78.312,
        "gram_stain": 0.945,
        "sporulation": 0.967,
        "motility": 0.92,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.944,
        "thermophilic_range_tmp": 0.055,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Clostridium",
        "thermarum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}