{
    "type": "genome",
    "identifier": "GCF_006352065.1",
    "organism": "Georgenia yuyongxinii",
    "title": "Georgenia yuyongxinii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute for Communicable Disease Control and Prevention, China CDC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006352065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11665377",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2589797",
        "species_taxid": "2589797",
        "organism_name": "Georgenia yuyongxinii",
        "infraspecific_name": "strain=Z443",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/18",
        "asm_name": "ASM635206v1",
        "asm_submitter": "National Institute for Communicable Disease Control and Prevention, China CDC",
        "gbrs_paired_asm": "GCA_006352065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/352/065/GCF_006352065.1_ASM635206v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4171640",
        "genome_size_ungapped": "4171640",
        "gc_percent": "72.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006352065.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "3839",
        "protein_coding_gene_count": "3723",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-18",
    "dateModified": "2019-06-18",
    "datePublished": "2019-06-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Georgenia"
        ],
        "sample_taxid": [
            "154116"
        ],
        "sample_host_organism": [
            "plateau pika (Ochotona curzoniae)"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Qinghai province, Yushu, Hoh Xil"
        ],
        "sample_host_location_id": [],
        "data_size": "1.111 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4171640",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4171640",
        "N50 (bp)": "4171640",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.0",
        "Number of CDSs": "3838",
        "Average Protein Length": "323.3",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "9",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Georgenia yuyongxinii",
                "strain": "strain=Z443",
                "accession": "GCA_006352065.1",
                "taxid": 2589797,
                "species_taxid": 2589797,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1389,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Georgenia thermotolerans",
                "strain": "strain=DSM 21501",
                "accession": "GCA_009299305.1",
                "taxid": 527326,
                "species_taxid": 527326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5956,
                "matched_fragments": 794,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia thermotolerans",
                "strain": "strain=NBRC 104148",
                "accession": "GCA_009193185.1",
                "taxid": 527326,
                "species_taxid": 527326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3959,
                "matched_fragments": 876,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia ruanii",
                "strain": "strain=JCM 15130",
                "accession": "GCA_009193175.1",
                "taxid": 348442,
                "species_taxid": 348442,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1839,
                "matched_fragments": 870,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia subflava",
                "strain": "strain=JCM 19765",
                "accession": "GCA_009362315.1",
                "taxid": 1622177,
                "species_taxid": 1622177,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3391,
                "matched_fragments": 678,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia soli",
                "strain": "strain=DSM 21838",
                "accession": "GCA_002563695.1",
                "taxid": 638953,
                "species_taxid": 638953,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1485,
                "matched_fragments": 722,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia muralis",
                "strain": "strain=DSM 14418",
                "accession": "GCA_003814705.1",
                "taxid": 154117,
                "species_taxid": 154117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9067,
                "matched_fragments": 694,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia wutianyii",
                "strain": "strain=Z294",
                "accession": "GCA_006349365.1",
                "taxid": 2585135,
                "species_taxid": 2585135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4799,
                "matched_fragments": 552,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanitalea stevensii",
                "strain": "strain=Sa1BUA1",
                "accession": "GCA_014837105.1",
                "taxid": 2763072,
                "species_taxid": 2763072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3799,
                "matched_fragments": 542,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruania albidiflava",
                "strain": "strain=DSM 18029",
                "accession": "GCA_000421225.1",
                "taxid": 366586,
                "species_taxid": 366586,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9636,
                "matched_fragments": 372,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Occultella kanbiaonis",
                "strain": "strain=HY164",
                "accession": "GCA_009708215.1",
                "taxid": 2675754,
                "species_taxid": 2675754,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.761,
                "matched_fragments": 474,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Occultella aeris",
                "strain": "strain=CIP 111667",
                "accession": "GCA_902703175.1",
                "taxid": 2761496,
                "species_taxid": 2761496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7218,
                "matched_fragments": 458,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Occultella gossypii",
                "strain": "strain=N2-46",
                "accession": "GCA_019947135.1",
                "taxid": 2800820,
                "species_taxid": 2800820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.705,
                "matched_fragments": 469,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Occultella glacieicola",
                "strain": "strain=T3246-1",
                "accession": "GCA_004353825.1",
                "taxid": 2518684,
                "species_taxid": 2518684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6952,
                "matched_fragments": 451,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006352065.1",
                "gtdb_species": "s__Georgenia sp006352065",
                "ani": 100.0,
                "matched_fragments": 1390,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.59",
                "min_intra_species_ani": "95.59",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009193185.1",
                "gtdb_species": "s__Georgenia thermotolerans",
                "ani": 83.4414,
                "matched_fragments": 872,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009193175.1",
                "gtdb_species": "s__Georgenia ruanii",
                "ani": 83.2102,
                "matched_fragments": 867,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003991205.1",
                "gtdb_species": "s__Georgenia sp003991205",
                "ani": 82.0397,
                "matched_fragments": 819,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009193155.1",
                "gtdb_species": "s__Georgenia subflava",
                "ani": 81.2044,
                "matched_fragments": 737,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002563695.1",
                "gtdb_species": "s__Georgenia soli",
                "ani": 81.1945,
                "matched_fragments": 715,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003814705.1",
                "gtdb_species": "s__Georgenia muralis",
                "ani": 80.8762,
                "matched_fragments": 697,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014837105.1",
                "gtdb_species": "s__Oceanitalea sp014837105",
                "ani": 79.3432,
                "matched_fragments": 546,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Oceanitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003710105.1",
                "gtdb_species": "s__Georgenia_A faecalis",
                "ani": 79.3145,
                "matched_fragments": 530,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Georgenia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "99.15",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900116375.1",
                "gtdb_species": "s__Oceanitalea nanhaiensis",
                "ani": 79.2707,
                "matched_fragments": 550,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Oceanitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_902703175.1",
                "gtdb_species": "s__Occultella aeris",
                "ani": 77.7109,
                "matched_fragments": 460,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004353825.1",
                "gtdb_species": "s__Occultella glacieicola",
                "ani": 77.703,
                "matched_fragments": 450,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Occultella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.171,
        "cell_length": 0.142,
        "doubling_h": null,
        "growth_tmp": 30.125,
        "optimum_tmp": 33.571,
        "optimum_ph": 7.541,
        "genome_size": 4090236.5,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.428,
        "range_salinity": null,
        "facultative_respiration": 0.375,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.625,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.833,
        "coccus_cell_shape": 0.166,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Georgenia",
        "yuyongxinii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}