{ "type": "genome", "identifier": "GCF_006352475.1", "organism": "Acinetobacter pullicarnis", "title": "Acinetobacter pullicarnis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006352475.1", "bioproject": "PRJNA224116", "biosample": "SAMN11607903", "wgs_master": "VCMZ00000000.1", "refseq_category": "reference genome", "taxid": "2576829", "species_taxid": "2576829", "organism_name": "Acinetobacter pullicarnis", "infraspecific_name": "strain=S23", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/18", "asm_name": "ASM635247v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_006352475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/352/475/GCF_006352475.1_ASM635247v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4125062", "genome_size_ungapped": "4125062", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006352475.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3767", "protein_coding_gene_count": "3556", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-18", "dateModified": "2019-06-18", "datePublished": "2019-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter pullicarnis" ], "sample_taxid": [ "2576829" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gyeonggi-do, Anseong-si" ], "sample_host_location_id": [], "data_size": "1.164 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4125062", "Number of Sequences": "3", "Longest Sequences (bp)": "3969478", "N50 (bp)": "3969478", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.5", "Number of CDSs": "3685", "Average Protein Length": "315.1", "Coding Ratio (%)": "84.5", "Number of rRNAs": "21", "Number of tRNAs": "80", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter pullicarnis", "strain": "strain=S23", "accession": "GCA_006352475.1", "taxid": 2576829, "species_taxid": 2576829, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1367, "total_fragments": 1373, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 80.1302, "matched_fragments": 395, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0038, "matched_fragments": 380, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rudis", "strain": "strain=CIP 110305", "accession": "GCA_000413895.1", "taxid": 632955, "species_taxid": 632955, "relation_to_type": "type", "validated": true, "ani": 79.3859, "matched_fragments": 405, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=DSM 14970", "accession": "GCA_000621065.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 79.361, "matched_fragments": 359, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 79.3379, "matched_fragments": 387, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=CIP 107464", "accession": "GCA_000368565.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 79.3291, "matched_fragments": 415, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bohemicus", "strain": "strain=ANC 3994", "accession": "GCA_000367925.1", "taxid": 1435036, "species_taxid": 1435036, "relation_to_type": "type", "validated": true, "ani": 79.2893, "matched_fragments": 423, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 79.2283, "matched_fragments": 437, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rudis", "strain": "strain=DSM 24031", "accession": "GCA_000829675.1", "taxid": 632955, "species_taxid": 632955, "relation_to_type": "type", "validated": true, "ani": 78.9869, "matched_fragments": 392, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=MTCC 9824", "accession": "GCA_000430245.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 78.9702, "matched_fragments": 410, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 78.9362, "matched_fragments": 401, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 78.9002, "matched_fragments": 399, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter larvae", "strain": "strain=BRTC-1", "accession": "GCA_001704115.1", "taxid": 1789224, "species_taxid": 1789224, "relation_to_type": "type", "validated": true, "ani": 78.8955, "matched_fragments": 361, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 78.7656, "matched_fragments": 305, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 78.7262, "matched_fragments": 305, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 78.674, "matched_fragments": 328, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 78.6694, "matched_fragments": 332, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=CCUG 68482", "accession": "GCA_008802205.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 78.5065, "matched_fragments": 336, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baylyi", "strain": "strain=CIP 107474", "accession": "GCA_000368685.1", "taxid": 202950, "species_taxid": 202950, "relation_to_type": "type", "validated": true, "ani": 78.5048, "matched_fragments": 287, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 78.4406, "matched_fragments": 262, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baylyi", "strain": "strain=DSM 14961", "accession": "GCA_000621045.1", "taxid": 202950, "species_taxid": 202950, "relation_to_type": "type", "validated": true, "ani": 78.17, "matched_fragments": 285, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006352475.1", "gtdb_species": "s__Acinetobacter pullicarnis", "ani": 100.0, "matched_fragments": 1369, "total_fragments": 1373, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000368045.1", "gtdb_species": "s__Acinetobacter johnsonii", "ani": 79.8955, "matched_fragments": 378, "total_fragments": 1373, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.19", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.80", "num_clustered_genomes": 59, "status": "-" }, { "accession": "GCF_015218165.1", "gtdb_species": "s__Acinetobacter piscicola_A", "ani": 79.6638, "matched_fragments": 442, "total_fragments": 1373, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.91", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000368565.1", "gtdb_species": "s__Acinetobacter gerneri", "ani": 79.3283, "matched_fragments": 415, "total_fragments": 1373, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001696605.3", "gtdb_species": "s__Acinetobacter wuhouensis", "ani": 79.2, "matched_fragments": 439, "total_fragments": 1373, "gtdb_taxonomy": 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