{ "type": "genome", "identifier": "GCF_006363815.1", "organism": "Thermomonospora catenispora", "title": "Thermomonospora catenispora", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GuangXi Medical University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006363815.1", "bioproject": "PRJNA224116", "biosample": "SAMN10502142", "wgs_master": "RRYT00000000.1", "refseq_category": "reference genome", "taxid": "2493090", "species_taxid": "2493090", "organism_name": "Thermomonospora catenispora", "infraspecific_name": "strain=3-22-3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/18", "asm_name": "ASM636381v1", "asm_submitter": "GuangXi Medical University", "gbrs_paired_asm": "GCA_006363815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/363/815/GCF_006363815.1_ASM636381v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5346804", "genome_size_ungapped": "5346244", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "109", "contig_count": "109", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006363815.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "4866", "protein_coding_gene_count": "4737", "non_coding_gene_count": "69", "pubmed_id": "31180315" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-18", "dateModified": "2019-06-18", "datePublished": "2019-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermomonospora catenispora" ], "sample_taxid": [ "2493090" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Nanning City" ], "sample_host_location_id": [], "data_size": "1.424 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5346804", "Number of Sequences": "109", "Longest Sequences (bp)": "367417", "N50 (bp)": "147721", "Gap Ratio (%)": "0.011614", "GCcontent (%)": "72.9", "Number of CDSs": "4839", "Average Protein Length": "311.3", "Coding Ratio (%)": "84.5", "Number of rRNAs": "3", "Number of tRNAs": "75", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermomonospora catenispora", "strain": "strain=3-22-3", "accession": "GCA_006363815.1", "taxid": 2493090, "species_taxid": 2493090, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1729, "total_fragments": 1733, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermomonospora curvata", "strain": "strain=DSM 43183", "accession": "GCA_000024385.1", "taxid": 2020, "species_taxid": 2020, "relation_to_type": "type", "validated": true, "ani": 84.9402, "matched_fragments": 1244, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonospora echinospora", "strain": "strain=DSM 43163", "accession": "GCA_900108175.1", "taxid": 1992, "species_taxid": 1992, "relation_to_type": "type", "validated": true, "ani": 84.7556, "matched_fragments": 1312, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonospora umbrina", "strain": "strain=DSM 43927", "accession": "GCA_003386555.1", "taxid": 111806, "species_taxid": 111806, "relation_to_type": "type", "validated": true, "ani": 82.9029, "matched_fragments": 1142, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rubrobrunea", "strain": "strain=NBRC 15275", "accession": "GCA_001552235.1", "taxid": 115335, "species_taxid": 115335, "relation_to_type": "type", "validated": true, "ani": 81.6023, "matched_fragments": 1040, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura viridis", "strain": "strain=DSM 43175", "accession": "GCA_015751755.1", "taxid": 58110, "species_taxid": 58110, "relation_to_type": "type", "validated": true, "ani": 80.8112, "matched_fragments": 1114, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura physcomitrii", "strain": "strain=LD22", "accession": "GCA_008923205.2", "taxid": 2650748, "species_taxid": 2650748, "relation_to_type": "type", "validated": true, "ani": 80.2886, "matched_fragments": 1047, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=DSM 43675", "accession": "GCA_014208105.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 80.0931, "matched_fragments": 1000, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 80.0536, "matched_fragments": 1093, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 80.0083, "matched_fragments": 1056, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rubrisoli", "strain": "strain=H3C3", "accession": "GCA_004349215.1", "taxid": 2530368, "species_taxid": 2530368, "relation_to_type": "type", "validated": true, "ani": 79.7507, "matched_fragments": 949, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 79.7477, "matched_fragments": 970, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 79.6388, "matched_fragments": 978, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": "GCA_003432485.1", "taxid": 2303421, "species_taxid": 2303421, "relation_to_type": "type", "validated": true, "ani": 79.4209, "matched_fragments": 847, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura syzygii", "strain": "strain=GKU157", "accession": "GCA_008085905.1", "taxid": 1427538, "species_taxid": 1427538, "relation_to_type": "type", "validated": true, "ani": 79.3649, "matched_fragments": 991, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura decatromicini", "strain": "strain=CYP1-5", "accession": "GCA_008121305.1", "taxid": 2604572, "species_taxid": 2604572, "relation_to_type": "type", "validated": true, "ani": 79.3504, "matched_fragments": 992, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus spadix", "strain": "strain=KCTC 9252", "accession": "GCA_024055725.1", "taxid": 79912, "species_taxid": 79912, "relation_to_type": "type", "validated": true, "ani": 78.8044, "matched_fragments": 830, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus purpureus", "strain": "strain=KCTC 19541", "accession": "GCA_024055795.1", "taxid": 478114, "species_taxid": 478114, "relation_to_type": "type", "validated": true, "ani": 78.6053, "matched_fragments": 788, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus bryophytorum", "strain": "strain=DSM 102200", "accession": "GCA_006716425.1", "taxid": 1490222, "species_taxid": 1490222, "relation_to_type": "type", "validated": true, "ani": 78.2642, "matched_fragments": 779, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides coralli", "strain": "strain=SCSIO 67246", "accession": "GCA_019880385.1", "taxid": 2872154, "species_taxid": 2872154, "relation_to_type": "type", "validated": true, "ani": 76.7724, "matched_fragments": 331, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides islandensis", "strain": "strain=KCTC 19275", "accession": "GCA_015352455.1", "taxid": 433663, "species_taxid": 433663, "relation_to_type": "type", "validated": true, "ani": 76.6659, "matched_fragments": 398, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora enzanensis", "strain": "strain=DSM 44649", "accession": "GCA_000374445.1", "taxid": 155975, "species_taxid": 155975, "relation_to_type": "type", "validated": true, "ani": 76.5703, "matched_fragments": 519, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces nymphaeiformis", "strain": "strain=SFB5A", "accession": "GCA_014203895.1", "taxid": 2663842, "species_taxid": 2663842, "relation_to_type": "type", "validated": true, "ani": 76.5283, "matched_fragments": 583, "total_fragments": 1733, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006363815.1", "gtdb_species": "s__Thermomonospora catenispora", "ani": 100.0, "matched_fragments": 1729, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003589885.1", "gtdb_species": "s__Thermomonospora amylolytica", "ani": 90.5393, "matched_fragments": 1459, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000024385.1", "gtdb_species": "s__Thermomonospora curvata", "ani": 84.9569, "matched_fragments": 1243, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900108175.1", "gtdb_species": "s__Thermomonospora echinospora", "ani": 84.7809, "matched_fragments": 1309, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003386555.1", "gtdb_species": "s__Thermomonospora umbrina", "ani": 82.9217, "matched_fragments": 1140, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003001795.1", "gtdb_species": "s__Actinomadura_B viridilutea", "ani": 81.655, "matched_fragments": 1058, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Actinomadura_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003289645.1", "gtdb_species": "s__Actinomadura_D craniellae", "ani": 80.7984, "matched_fragments": 1019, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Actinomadura_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015751755.1", "gtdb_species": "s__Spirillospora viridis", "ani": 80.782, "matched_fragments": 1121, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000718255.1", "gtdb_species": "s__Spirillospora albida", "ani": 79.8088, "matched_fragments": 942, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004348535.1", "gtdb_species": "s__Spirillospora sp004348535", "ani": 79.6526, "matched_fragments": 898, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105415.1", "gtdb_species": "s__Streptomyces sp900105415", "ani": 76.7178, "matched_fragments": 584, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.65", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000716445.1", "gtdb_species": "s__Streptomyces wedmorensis", "ani": 76.6215, "matched_fragments": 608, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "97.63", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014649855.1", "gtdb_species": "s__Streptomyces roseolus", "ani": 76.5849, "matched_fragments": 616, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002911015.1", "gtdb_species": "s__Streptomyces populi", "ani": 76.5622, "matched_fragments": 569, "total_fragments": 1733, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.17", "min_intra_species_ani": "95.17", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 49.0, "optimum_tmp": 55.0, "optimum_ph": 9.25, "genome_size": 5813516.9, "gc_content": 71.6, "coding_genes": 4799.667, "rRNA16S_genes": 5.0, "tRNA_genes": 59.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Thermomonospora", "catenispora" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }