# locus_id locus_tag location classification internal_stop indel ref_id description query_cov ref_cov identity MGA_7 LOCUS_00060 sequence1:2279..2476(+) frameshift,internal_stop_codon 2535..2537(+) 2440,2515 WP_000438314.1 nucleoside-diphosphate kinase 75.4 34.8 55.1 MGA_19 LOCUS_00180 sequence1:13981..14328(+) frameshift,internal_stop_codon 14326..14328(+) 14412 WP_003058426.1 YkgJ family cysteine cluster protein 100.0 68.5 93.0 MGA_29 LOCUS_00280 sequence1:24882..25250(+) frameshift,internal_stop_codon 25251..25253(+) 24680,24734,24863 WP_105158881.1 replication initiator protein A 100.0 44.1 66.4 MGA_30 LOCUS_00290 sequence1:25425..25748(+) partial WP_074485044.1 DNA (cytosine-5-)-methyltransferase 70.1 16.6 94.7 MGA_31 LOCUS_00300 sequence1:26064..26273(+) frameshift,internal_stop_codon 26016..26018(+),25926..25928(+) 26264,26354,26426 WP_168549381.1 SAG1250 family conjugative relaxase 98.6 11.0 91.2 MGA_32 LOCUS_00310 sequence1:26538..27233(+) frameshift,internal_stop_codon 26403..26405(+) 26267,26420 WP_093958851.1 SAG1250 family conjugative relaxase 99.6 36.2 68.3 MGA_41 LOCUS_00400 sequence1:33581..33712(+) internal_stop_codon 33953..33955(+),33710..33712(+) WP_000201988.1 site-specific integrase 100.0 10.8 81.4 MGA_42 LOCUS_00410 sequence1:33734..33955(+) internal_stop_codon 33953..33955(+),34247..34249(+),33710..33712(+) WP_012775621.1 site-specific integrase 98.6 18.0 77.8 MGA_43 LOCUS_00420 sequence1:34028..34249(+) internal_stop_codon 33953..33955(+),34247..34249(+) WP_000201988.1 site-specific integrase 100.0 18.3 87.7 MGA_44 LOCUS_00430 sequence1:34280..34663(+) internal_stop_codon 34661..34663(+),34247..34249(+) WP_000201988.1 site-specific integrase 100.0 31.8 86.6 MGA_77 LOCUS_00760 sequence1:65901..66518(+) frameshift 66452 WP_009854121.1 SDR family oxidoreductase 94.1 78.5 74.1 MGA_110 LOCUS_01090 sequence1:99787..100269(-) frameshift,internal_stop_codon 100275..100277(-),100510..100512(-) 100400,100546,100479 WP_000354840.1 LysR family transcriptional regulator 100.0 54.4 77.5 MGA_111 LOCUS_01100 sequence1:100682..101227(+) partial WP_001286427.1 PTS sugar transporter subunit IIC 100.0 53.4 84.6 MGA_217 LOCUS_02160 sequence1:209216..209818(-) partial WP_000227060.1 hypothetical protein 53.5 67.7 44.4 MGA_218 LOCUS_02170 sequence1:209830..210594(-) partial WP_010922095.1 glucosaminidase domain-containing protein 96.9 58.8 45.7 MGA_223 LOCUS_02220 sequence1:211759..213621(-) partial WP_000536253.1 DUF859 family phage minor structural protein 76.6 71.1 35.3 MGA_224 LOCUS_02230 sequence1:213626..217066(-) partial WP_000955548.1 glucosaminidase domain-containing protein 82.5 72.2 43.4 MGA_226 LOCUS_02250 sequence1:218552..220357(-) partial WP_000224695.1 hypothetical protein 66.9 57.2 37.3 MGA_262 LOCUS_02610 sequence1:237865..238179(-) partial WP_001080846.1 helix-turn-helix transcriptional regulator 92.3 67.4 49.0 MGA_268 LOCUS_02670 sequence1:239936..240136(-) partial WP_012258019.1 cupin domain-containing protein 92.4 28.4 47.5 MGA_296 LOCUS_02950 sequence1:270452..270595(-) partial WP_002894209.1 teichoic acid D-Ala incorporation-associated protein DltX 72.3 79.1 58.8 MGA_311 LOCUS_03100 sequence1:286424..286939(+) frameshift 286867 WP_172450158.1 IS3 family transposase 94.2 36.0 93.2 MGA_312 LOCUS_03110 sequence1:286960..287766(+) frameshift 286873 WP_172450158.1 IS3 family transposase 100.0 60.0 95.1 MGA_318 LOCUS_03170 sequence1:292817..293329(-) frameshift,internal_stop_codon 293518..293520(-) 293529 WP_164227857.1 nucleoside phosphorylase 100.0 64.4 86.5 MGA_347 LOCUS_03460 sequence1:326749..327045(+) frameshift,internal_stop_codon 327317..327319(+),327203..327205(+),327044..327046(+) 326674 WP_100190746.1 IS3 family transposase 95.9 24.6 61.7 MGA_348 LOCUS_03470 sequence1:327358..327579(+) internal_stop_codon 327202..327204(+),327316..327318(+) WP_143249001.1 IS3 family transposase 90.4 48.2 83.3 MGA_379 LOCUS_03780 sequence1:361404..361595(-) partial WP_000934666.1 penicillin-binding protein PBP2B 85.7 7.6 53.7 MGA_387 LOCUS_03860 sequence1:368952..369134(-) partial WP_000965642.1 hypothetical protein 61.7 62.7 75.7 MGA_504 LOCUS_05030 sequence1:469004..470863(-) frameshift 470937 WP_010922513.1 CRISPR-associated helicase/endonuclease Cas3 100.0 77.2 99.2 MGA_505 LOCUS_05040 sequence1:470905..471411(-) frameshift 470934 WP_010922513.1 CRISPR-associated helicase/endonuclease Cas3 94.6 19.8 100.0 MGA_508 LOCUS_05070 sequence1:474775..474954(-) partial WP_003055970.1 GNAT family protein 100.0 30.1 91.5 MGA_562 LOCUS_05610 sequence1:531945..532160(-) internal_stop_codon 532179..532181(-) WP_010922072.1 DNA modification methylase 100.0 18.3 100.0 MGA_563 LOCUS_05620 sequence1:532179..533111(-) internal_stop_codon 532179..532181(-) WP_010922072.1 DNA modification methylase 100.0 79.9 95.2 MGA_582 LOCUS_05810 sequence1:540771..541532(-) partial WP_001181101.1 replication initiator protein A 45.8 35.5 38.5 MGA_611 LOCUS_06090 sequence1:572745..573062(-) partial WP_002983650.1 DNA-directed RNA polymerase subunit omega 68.6 68.6 100.0 MGA_652 LOCUS_06500 sequence1:618060..618620(-) frameshift 618657 WP_002983556.1 glycerol kinase GlpK 100.0 36.6 97.3 MGA_653 LOCUS_06510 sequence1:618622..619587(-) frameshift 618654 WP_002983556.1 glycerol kinase GlpK 96.9 61.2 100.0 MGA_668 LOCUS_06660 sequence1:634586..634849(-) frameshift 634851,634611 WP_002468897.1 tagatose-6-phosphate kinase 88.5 24.8 53.2 MGA_678 LOCUS_06760 sequence1:642388..642549(-) frameshift 642399 WP_010922579.1 CopY/TcrY family copper transport repressor 100.0 36.8 98.1 MGA_727 LOCUS_07250 sequence1:687208..687432(-) frameshift 687406 WP_000448266.1 pyruvate, phosphate dikinase 94.6 7.9 64.3 MGA_750 LOCUS_07480 sequence1:718814..719272(-) frameshift 719240 WP_010921895.1 ISAs1-like element IS1548 family transposase 93.4 37.7 99.3 MGA_751 LOCUS_07490 sequence1:719232..719936(-) frameshift 719237 WP_000564846.1 ISAs1-like element IS1548 family transposase 99.6 61.8 100.0 MGA_791 LOCUS_07890 sequence1:764324..764638(+) frameshift 764282 WP_002992262.1 helix-turn-helix transcriptional regulator 100.0 83.9 100.0 MGA_834 LOCUS_08310 sequence1:811452..812063(-) partial WP_000761138.1 ATP-binding protein 98.5 38.9 31.9 MGA_837 LOCUS_08340 sequence1:815697..816059(-) partial WP_000151458.1 ATP-binding cassette domain-containing protein 89.2 50.2 46.7 MGA_850 LOCUS_08470 sequence1:828521..828670(+) partial WP_000022160.1 site-specific integrase 95.9 12.2 85.1 MGA_854 LOCUS_08510 sequence1:830070..830576(-) partial WP_038431592.1 hypothetical protein 92.9 66.8 92.9 MGA_866 LOCUS_08630 sequence1:840952..841167(-) frameshift 841202 WP_009880550.1 PTS ascorbate transporter subunit IIC 100.0 15.5 93.0 MGA_867 LOCUS_08640 sequence1:841095..842330(-) frameshift 841202 WP_009880550.1 PTS ascorbate transporter subunit IIC 91.5 81.9 96.5 MGA_913 LOCUS_09100 sequence1:895274..896557(-) partial WP_010922710.1 LPXTG-anchored fibronectin-binding protein FbpA 41.7 47.0 88.8 MGA_915 LOCUS_09120 sequence1:900582..901787(+) frameshift 901918 WP_184006649.1 IS1182 family transposase 94.3 78.8 96.8 MGA_917 LOCUS_09140 sequence1:903472..904602(-) partial WP_010922714.1 M protein 66.8 50.2 58.1 MGA_927 LOCUS_09240 sequence1:916487..916771(-) partial WP_002993558.1 hypothetical protein 100.0 70.1 95.7 MGA_931 LOCUS_09280 sequence1:919379..919684(-) partial WP_010922720.1 cysteine proteinase exotoxin SpeB 95.0 25.4 38.2 MGA_979 LOCUS_09760 sequence1:976618..976857(-) internal_stop_codon 976894..976896(-) WP_007056318.1 helix-turn-helix domain-containing protein 91.1 60.5 68.1 MGA_1012 LOCUS_10090 sequence1:1008238..1009161(+) partial WP_003077408.1 helix-turn-helix transcriptional regulator 99.0 64.5 86.8 MGA_1013 LOCUS_10100 sequence1:1009227..1009979(+) partial WP_003032336.1 type IV secretion system DNA-binding domain-containing protein 100.0 68.3 90.0 MGA_1015 LOCUS_10120 sequence1:1011054..1011335(-) frameshift,internal_stop_codon 1011446..1011448(-),1011053..1011055(-) 1010920,1011388 WP_000402394.1 helix-turn-helix transcriptional regulator 100.0 47.2 45.2 MGA_1053 LOCUS_10500 sequence1:1054077..1055129(+) partial WP_010922804.1 YfhO family protein 100.0 40.8 97.7 MGA_1054 LOCUS_10510 sequence1:1056295..1056576(-) frameshift 1056297 WP_004270929.1 IS30 family transposase 79.6 21.3 40.5 MGA_1129 LOCUS_11230 sequence1:1147432..1147659(+) frameshift,internal_stop_codon 1147390..1147392(+) 1147650,1147205 WP_002352368.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 77.3 20.6 65.5 MGA_1167 LOCUS_11610 sequence1:1185095..1185778(+) frameshift 1185032 WP_008090262.1 class C sortase 99.6 79.9 81.4 MGA_1170 LOCUS_11640 sequence1:1188460..1188855(-) frameshift 1188965 WP_004454990.1 LysR family transcriptional regulator 80.9 35.3 34.9 MGA_1171 LOCUS_11650 sequence1:1188951..1189370(-) frameshift 1188965 WP_004454990.1 LysR family transcriptional regulator 97.8 45.3 51.5 MGA_1193 LOCUS_11870 sequence1:1211619..1211975(+) internal_stop_codon 1211559..1211561(+) WP_003058235.1 NAD glycohydrolase inhibitor 100.0 73.3 96.6 MGA_1194 LOCUS_11880 sequence1:1211990..1212346(+) frameshift 1212292 WP_010921831.1 cholesterol-dependent cytolysin streptolysin O 87.3 18.0 83.5 MGA_1195 LOCUS_11890 sequence1:1212622..1213713(+) partial WP_010921831.1 cholesterol-dependent cytolysin streptolysin O 100.0 63.6 98.9 MGA_1219 LOCUS_12130 sequence1:1238743..1238958(-) internal_stop_codon 1239112..1239114(-),1238998..1239000(-) WP_143249001.1 IS3 family transposase 95.8 49.6 80.9 MGA_1220 LOCUS_12140 sequence1:1239271..1239567(-) frameshift,internal_stop_codon 1238997..1238999(-),1239111..1239113(-),1239270..1239272(-) 1239641 WP_100190746.1 IS3 family transposase 95.9 24.6 61.7 MGA_1222 LOCUS_12160 sequence1:1239971..1240435(-) partial WP_010921847.1 SLC13 family permease 100.0 35.3 94.8 MGA_1224 LOCUS_12180 sequence1:1242677..1243483(-) frameshift 1243569 WP_172450158.1 IS3 family transposase 100.0 60.0 96.6 MGA_1225 LOCUS_12190 sequence1:1243504..1244019(-) frameshift 1243575 WP_172450158.1 IS3 family transposase 94.2 36.0 93.2 MGA_1298 LOCUS_12910 sequence1:1331409..1332113(+) frameshift 1332107 WP_010921895.1 ISAs1-like element IS1548 family transposase 99.6 61.8 100.0 MGA_1299 LOCUS_12920 sequence1:1332073..1332531(+) frameshift 1332104 WP_010921895.1 ISAs1-like element IS1548 family transposase 93.4 37.7 99.3 MGA_1322 LOCUS_13150 sequence1:1353076..1354032(+) frameshift 1354029 WP_002991036.1 two-component system sensor histidine kinase CovS 100.0 63.6 99.1 MGA_1323 LOCUS_13160 sequence1:1354037..1354579(+) frameshift 1354029 WP_002991036.1 two-component system sensor histidine kinase CovS 100.0 36.0 100.0 MGA_1336 LOCUS_13290 sequence1:1369071..1369529(-) frameshift 1369497 WP_010921895.1 ISAs1-like element IS1548 family transposase 93.4 37.7 99.3 MGA_1337 LOCUS_13300 sequence1:1369489..1370193(-) frameshift 1369494 WP_000564846.1 ISAs1-like element IS1548 family transposase 99.6 61.8 100.0 MGA_1427 LOCUS_14200 sequence1:1452862..1452996(-) frameshift 1453000 WP_000191691.1 IS256-like element ISSag11 family transposase 100.0 11.3 72.7 MGA_1428 LOCUS_14210 sequence1:1453126..1453548(-) frameshift 1453000 WP_000191691.1 IS256-like element ISSag11 family transposase 91.4 32.7 86.7 MGA_1441 LOCUS_14340 sequence1:1464101..1464337(+) partial WP_002985700.1 preprotein translocase subunit SecG 74.4 74.4 87.9 MGA_1457 LOCUS_14500 sequence1:1480990..1482165(+) partial WP_010921986.1 ABC-2 family transporter protein 51.7 73.9 98.0 MGA_1478 LOCUS_14710 sequence1:1505506..1506351(-) internal_stop_codon 1506436..1506438(-) WP_012560534.1 DUF2326 domain-containing protein 100.0 50.9 95.7 MGA_1479 LOCUS_14720 sequence1:1506436..1507164(-) internal_stop_codon 1506436..1506438(-) WP_012560534.1 DUF2326 domain-containing protein 100.0 43.8 97.5 MGA_1481 LOCUS_14740 sequence1:1507379..1508038(-) partial WP_014635352.1 hypothetical protein 100.0 74.5 95.0 MGA_1486 LOCUS_14790 sequence1:1509522..1509974(+) partial WP_000523689.1 phage portal protein 90.7 31.2 87.1 MGA_1487 LOCUS_14800 sequence1:1510040..1510354(+) partial WP_006738705.1 phage tail spike protein 73.1 7.6 86.8 MGA_1488 LOCUS_14810 sequence1:1510771..1511109(+) partial WP_008088279.1 Fic family protein 91.1 31.1 99.0 MGA_1491 LOCUS_14840 sequence1:1513446..1514162(+) partial WP_000926333.1 LD-carboxypeptidase 98.7 71.5 44.8 MGA_1494 LOCUS_14870 sequence1:1515847..1516488(-) frameshift,internal_stop_codon 1515764..1515766(-) 1516649,1515869 WP_088197835.1 IS3-like element ISSag5 family transposase 96.7 54.1 95.1 MGA_1495 LOCUS_14880 sequence1:1516608..1516928(-) frameshift 1516640 WP_165992825.1 IS3 family transposase 85.8 23.9 87.9 MGA_1553 LOCUS_15460 sequence1:1580103..1580744(+) internal_stop_codon 1580742..1580744(+) WP_000048144.1 (S)-acetoin forming diacetyl reductase 95.8 80.3 99.0 MGA_1554 LOCUS_15470 sequence1:1580748..1580894(+) internal_stop_codon 1580742..1580744(+) WP_000048144.1 (S)-acetoin forming diacetyl reductase 100.0 18.9 97.9 MGA_1567 LOCUS_15600 sequence1:1593926..1594687(+) partial WP_010922203.1 phage antirepressor KilAC domain-containing protein 68.4 70.2 74.6 MGA_1603 LOCUS_15960 sequence1:1610504..1611169(+) partial WP_011475651.1 Clp protease ClpP 76.9 72.0 43.4 MGA_1604 LOCUS_15970 sequence1:1611193..1612377(+) partial WP_010905714.1 phage major capsid protein 78.7 72.5 42.0 MGA_1612 LOCUS_16050 sequence1:1615178..1619101(+) partial WP_011475661.1 tape measure protein 67.9 72.7 22.3 MGA_1643 LOCUS_16350 sequence1:1648611..1649201(-) frameshift,internal_stop_codon 1649265..1649267(-) 1649240,1648627,1649351 WP_164925488.1 IS110 family transposase 99.0 45.1 79.4 MGA_1644 LOCUS_16360 sequence1:1649250..1649501(-) frameshift,internal_stop_codon 1649264..1649266(-) 1649350,1649518,1649239 WP_162038636.1 IS110 family transposase 61.4 11.6 82.4 MGA_1646 LOCUS_16380 sequence1:1650516..1651403(-) frameshift 1650542 WP_010921809.1 transcriptional regulator RofA 96.9 57.3 32.3 MGA_1682 LOCUS_16740 sequence1:1699645..1699821(+) partial WP_000048058.1 30S ribosomal protein S21 74.1 74.1 100.0 MGA_1748 LOCUS_17400 sequence1:1770083..1770301(-) frameshift,internal_stop_codon 1770374..1770376(-),1770377..1770379(-) 1770401 WP_128834060.1 IS3-like element ISSmu1 family transposase 100.0 16.0 81.9 MGA_1749 LOCUS_17410 sequence1:1770598..1770807(-) frameshift 1770884 WP_010921949.1 streptococcal pyrogenic exotoxin SpeJ 100.0 29.7 71.0 MGA_1858 LOCUS_18500 sequence1:1886031..1886777(+) partial WP_025188680.1 DnaD domain protein 44.0 43.4 56.9 MGA_1860 LOCUS_18520 sequence1:1887599..1887829(+) partial WP_000220553.1 hypothetical protein 94.7 56.7 38.2 MGA_1863 LOCUS_18550 sequence1:1888479..1888784(+) partial WP_000793494.1 DUF1372 family protein 62.4 57.8 77.8 MGA_1880 LOCUS_18720 sequence1:1897042..1897848(+) partial WP_013096330.1 Clp protease ClpP 67.2 28.7 32.8