{ "type": "genome", "identifier": "GCF_006381105.1", "organism": "Flavicella sediminum", "title": "Flavicella sediminum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Qingdao Institute of Bioenergy and Bioprocess Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006381105.1", "bioproject": "PRJNA224116", "biosample": "SAMN11869186", "wgs_master": "VDET00000000.1", "refseq_category": "reference genome", "taxid": "2585141", "species_taxid": "2585141", "organism_name": "Flavicella sediminum", "infraspecific_name": "strain=ALS 84", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/19", "asm_name": "ASM638110v1", "asm_submitter": "Qingdao Institute of Bioenergy and Bioprocess Technology", "gbrs_paired_asm": "GCA_006381105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/381/105/GCF_006381105.1_ASM638110v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4583336", "genome_size_ungapped": "4580912", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "77", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006381105.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3631", "protein_coding_gene_count": "3550", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-19", "dateModified": "2019-06-19", "datePublished": "2019-06-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavicella sediminum" ], "sample_taxid": [ "2585141" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shandong" ], "sample_host_location_id": [], "data_size": "1.275 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4583336", "Number of Sequences": "77", "Longest Sequences (bp)": "1849022", "N50 (bp)": "524071", "Gap Ratio (%)": "0.053651", "GCcontent (%)": "33.6", "Number of CDSs": "3547", "Average Protein Length": "386.9", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavicella sediminum", "strain": "strain=ALS 84", "accession": "GCA_006381105.1", "taxid": 2585141, "species_taxid": 2585141, 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77.8207, "matched_fragments": 300, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter butkevichii", "strain": "strain=KCTC 12100", "accession": "GCA_002954605.1", "taxid": 218490, "species_taxid": 218490, "relation_to_type": "type", "validated": true, "ani": 77.6853, "matched_fragments": 266, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenyingzhuangia marina", "strain": "strain=CGMCC 1.12162", "accession": "GCA_014636515.1", "taxid": 1195760, "species_taxid": 1195760, "relation_to_type": "type", "validated": true, "ani": 77.5004, "matched_fragments": 267, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 77.4532, "matched_fragments": 177, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter atrinae", "strain": "strain=KACC 17473", "accession": "GCA_001640115.1", "taxid": 1333662, "species_taxid": 1333662, "relation_to_type": "type", "validated": true, "ani": 77.291, "matched_fragments": 230, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 77.2874, "matched_fragments": 182, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 77.1982, "matched_fragments": 231, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter sejongensis", "strain": "strain=KCTC 23670", "accession": "GCA_002814075.1", "taxid": 985043, "species_taxid": 985043, "relation_to_type": "type", "validated": true, "ani": 77.1425, "matched_fragments": 270, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 77.1032, "matched_fragments": 273, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum finnmarkense", "strain": "strain=TNO010", "accession": "GCA_900239495.1", "taxid": 2781243, "species_taxid": 2781243, "relation_to_type": "type", "validated": true, "ani": 77.0613, "matched_fragments": 152, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=RA4-7", "accession": "GCA_002201315.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 77.0422, "matched_fragments": 208, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 77.0148, "matched_fragments": 203, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 76.8199, "matched_fragments": 181, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter maritimus", "strain": "strain=DSM 24450", "accession": "GCA_900116115.1", "taxid": 593133, "species_taxid": 593133, "relation_to_type": "type", "validated": true, "ani": 76.8104, "matched_fragments": 182, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aiptasiae", "strain": "strain=a4", "accession": "GCA_008806755.1", "taxid": 426481, "species_taxid": 426481, "relation_to_type": "type", "validated": true, "ani": 76.5047, "matched_fragments": 158, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum flavum", "strain": "strain=A20", "accession": "GCA_016406085.1", "taxid": 2795986, "species_taxid": 2795986, "relation_to_type": "type", "validated": true, "ani": 76.4499, "matched_fragments": 154, "total_fragments": 1490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum luteum", "strain": "strain=SM1352", "accession": "GCA_003449015.1", "taxid": 1548456, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011927765.1", "gtdb_species": "s__Wenyingzhuangia aestuarii", "ani": 78.7087, "matched_fragments": 317, "total_fragments": 1490, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Wenyingzhuangia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905479475.1", "gtdb_species": "s__Flavicella sp905479475", "ani": 78.2675, "matched_fragments": 228, "total_fragments": 1490, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavicella", "ani_circumscription_radius": 95.0, 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