{ "type": "genome", "identifier": "GCF_006385165.1", "organism": "Streptococcus symci", "title": "Streptococcus symci", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shenyang Medical College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006385165.1", "bioproject": "PRJNA224116", "biosample": "SAMN12045883", "wgs_master": "VFJA00000000.1", "refseq_category": "reference genome", "taxid": "2588991", "species_taxid": "2588991", "organism_name": "Streptococcus symci", "infraspecific_name": "strain=C17", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/22", "asm_name": "ASM638516v1", "asm_submitter": "Shenyang Medical College", "gbrs_paired_asm": "GCA_006385165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/385/165/GCF_006385165.1_ASM638516v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2189419", "genome_size_ungapped": "2189399", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006385165.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2097", "protein_coding_gene_count": "2001", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-22", "dateModified": "2019-06-22", "datePublished": "2019-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus symci" ], "sample_taxid": [ "2588991" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shenyang" ], "sample_host_location_id": [], "data_size": "0.616 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 16.67, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2189419", "Number of Sequences": "6", "Longest Sequences (bp)": "966510", "N50 (bp)": "425683", "Gap Ratio (%)": "0.000913", "GCcontent (%)": "40.0", "Number of CDSs": "2034", "Average Protein Length": "322.8", "Coding Ratio (%)": "90.0", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus symci", "strain": "strain=C17", "accession": "GCA_006385165.1", "taxid": 2588991, "species_taxid": 2588991, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 680, "total_fragments": 728, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 94.6526, "matched_fragments": 548, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gwangjuense", "strain": "strain=ChDC B345", "accession": "GCA_003627155.1", "taxid": 1433513, "species_taxid": 1433513, "relation_to_type": "type", "validated": true, "ani": 94.4831, "matched_fragments": 535, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus chosunense", "strain": "strain=ChDC B353", "accession": "GCA_003626515.1", "taxid": 2707003, "species_taxid": 2707003, "relation_to_type": "type", "validated": true, "ani": 94.2279, "matched_fragments": 539, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { 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"accession": "GCA_002087075.1", "taxid": 257758, "species_taxid": 257758, "relation_to_type": "type", "validated": true, "ani": 91.6628, "matched_fragments": 474, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudopneumoniae", "strain": "strain=ATCC BAA-960", "accession": "GCA_000257825.1", "taxid": 257758, "species_taxid": 257758, "relation_to_type": "type", "validated": true, "ani": 91.5994, "matched_fragments": 421, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=CCUG 28588", "accession": "GCA_001679535.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 91.3019, "matched_fragments": 471, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=NCTC7465", "accession": "GCA_001457635.1", "taxid": 1313, 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