{
    "type": "genome",
    "identifier": "GCF_006385615.1",
    "organism": "Chlamydophila parapsittaci",
    "title": "Chlamydophila parapsittaci",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Federal Research Center of Virology and Microbiology, Branch in Saratov",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006385615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12057462",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "344886",
        "species_taxid": "344886",
        "organism_name": "Chlamydophila parapsittaci",
        "infraspecific_name": "strain=Rostinovo-70",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/23",
        "asm_name": "ASM638561v1",
        "asm_submitter": "Federal Research Center of Virology and Microbiology, Branch in Saratov",
        "gbrs_paired_asm": "GCA_006385615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/385/615/GCF_006385615.1_ASM638561v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1160112",
        "genome_size_ungapped": "1160112",
        "gc_percent": "39.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-28",
        "total_gene_count": "1027",
        "protein_coding_gene_count": "961",
        "non_coding_gene_count": "44",
        "pubmed_id": "32071972"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-23",
    "dateModified": "2019-06-23",
    "datePublished": "2019-06-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chlamydophila parapsittaci"
        ],
        "sample_taxid": [
            "344886"
        ],
        "sample_host_organism": [
            "sheep"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.330 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1160112",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "1152559",
        "N50 (bp)": "1152559",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.1",
        "Number of CDSs": "986",
        "Average Protein Length": "345.7",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Chlamydia psittaci",
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                "accession": "GCA_000191925.1",
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                "species_taxid": 83554,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
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                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5325,
                "matched_fragments": 383,
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                "status": "conclusive"
            },
            {
                "organism_name": "Chlamydia buteonis",
                "strain": "",
                "accession": "GCA_900634605.1",
                "taxid": 2494525,
                "species_taxid": 2494525,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlamydia abortus",
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                "species_taxid": 83555,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.3741,
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                "total_fragments": 386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlamydia poikilotherma",
                "strain": "strain=S15-834K",
                "accession": "GCA_900239975.1",
                "taxid": 1967783,
                "species_taxid": 1967783,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4147,
                "matched_fragments": 318,
                "total_fragments": 386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlamydia caviae",
                "strain": "",
                "accession": "GCA_000007605.1",
                "taxid": 83557,
                "species_taxid": 83557,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1536,
                "matched_fragments": 315,
                "total_fragments": 386,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000204255.1",
                "gtdb_species": "s__Chlamydophila psittaci",
                "ani": 98.5325,
                "matched_fragments": 383,
                "total_fragments": 386,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "97.64",
                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 66,
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            },
            {
                "accession": "GCF_900634605.1",
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                "total_fragments": 386,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002895085.1",
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                "total_fragments": 386,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "97.53",
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                "num_clustered_genomes": 57,
                "status": "-"
            },
            {
                "accession": "GCF_018343815.1",
                "gtdb_species": "s__Chlamydophila sp018343815",
                "ani": 83.4664,
                "matched_fragments": 317,
                "total_fragments": 386,
                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900239975.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000009945.1",
                "gtdb_species": "s__Chlamydophila felis",
                "ani": 82.8421,
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                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000583875.1",
                "gtdb_species": "s__Chlamydophila avium",
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                "num_clustered_genomes": 4,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
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        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
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        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Chlamydophila",
        "parapsittaci"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}