# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_59	LOCUS_00590	sequence01:73703..74284(-)	frameshift		73705	WP_001144910.1	GNAT family protein	100.0	83.5	92.7
MGA_65	LOCUS_00650	sequence01:79891..81009(+)	frameshift		81000	WP_001215128.1	sensor histidine kinase	99.5	67.4	28.1
MGA_66	LOCUS_00660	sequence01:81032..81550(+)	frameshift		81000	WP_011285511.1	sensor histidine kinase	86.6	27.1	43.6
MGA_128	LOCUS_01280	sequence01:126565..128040(-)	partial			WP_010714140.1	DNA primase family protein	77.0	46.7	38.0
MGA_136	LOCUS_01360	sequence01:131671..132306(+)	partial			WP_003058809.1	S24 family peptidase	51.2	42.4	52.8
MGA_142	LOCUS_01420	sequence01:136357..136608(+)	partial			WP_011460715.1	DNA damage-inducible protein D	84.3	24.6	54.3
MGA_148	LOCUS_01480	sequence01:142168..142431(+)	partial			WP_003563849.1	SemiSWEET family transporter	80.5	68.3	48.6
MGA_169	LOCUS_01690	sequence01:160578..160766(-)	partial			WP_000933479.1	hypothetical protein	90.3	71.4	55.4
MGA_210	LOCUS_02100	sequence01:204369..206528(-)	frameshift		206716,206698,206692,206710	WP_000527121.1	YSIRK signal domain/LPXTG anchor domain surface protein	99.6	28.2	60.6
MGA_211	LOCUS_02110	sequence01:206663..214732(-)	frameshift,internal_stop_codon	206732..206734(-),206729..206731(-)	206728,206701,206737,207667,206707,206709,206710,207606,206716	WP_000527121.1	YSIRK signal domain/LPXTG anchor domain surface protein	37.5	41.2	53.8
MGA_243	LOCUS_02430	sequence01:245044..245904(-)	partial			WP_010905350.1	phage replisome organiser protein	51.7	54.7	51.4
MGA_308	LOCUS_03080	sequence01:308922..309290(+)	frameshift,internal_stop_codon	309360..309362(+),309288..309290(+)	309431	WP_012775456.1	IS4 family transposase	99.2	28.2	53.7
MGA_309	LOCUS_03090	sequence01:309460..310209(+)	frameshift,internal_stop_codon	309360..309362(+),309288..309290(+)	309440	WP_012775456.1	IS4 family transposase	100.0	58.3	63.2
MGA_310	LOCUS_03100	sequence01:310240..310542(+)	internal_stop_codon	310540..310542(+),310744..310746(+)		WP_148255714.1	IS630 family transposase	100.0	28.7	63.0
MGA_311	LOCUS_03110	sequence01:311027..311212(+)	frameshift		311056,310759	WP_148255714.1	IS630 family transposase	83.6	14.6	76.5
MGA_335	LOCUS_03350	sequence02:25827..25964(-)	partial			WP_011836289.1	phosphoribosylglycinamide formyltransferase	93.3	22.5	88.1
MGA_353	LOCUS_03530	sequence02:41456..42271(-)	partial			WP_000584691.1	GHKL domain-containing protein	100.0	60.5	96.3
MGA_365	LOCUS_03650	sequence02:53354..53551(+)	partial			WP_000603333.1	Rpn family recombination-promoting nuclease/putative transposase	100.0	23.4	82.6
MGA_366	LOCUS_03660	sequence02:53757..53978(+)	internal_stop_codon	53549..53551(+)		WP_000603331.1	Rpn family recombination-promoting nuclease/putative transposase	100.0	25.0	75.3
MGA_367	LOCUS_03670	sequence02:54249..55544(-)	partial			WP_001035315.1	pneumococcal surface protein A	50.1	35.4	50.7
MGA_368	LOCUS_03680	sequence02:55686..57011(-)	partial			WP_000753855.1	choline-binding protein PcpA	47.6	30.3	48.8
MGA_370	LOCUS_03700	sequence02:58609..58842(-)	internal_stop_codon	58891..58893(-)		WP_140834174.1	Rpn family recombination-promoting nuclease/putative transposase	100.0	25.0	76.6
MGA_372	LOCUS_03720	sequence02:60122..60379(-)	partial			WP_000603344.1	Rpn family recombination-promoting nuclease/putative transposase	95.3	30.0	72.2
MGA_383	LOCUS_03830	sequence02:69424..69933(-)	frameshift		69976	WP_148255720.1	IS630 family transposase	99.4	48.1	73.2
MGA_384	LOCUS_03840	sequence02:69974..70279(-)	frameshift		70296,69975,70351	WP_148255720.1	IS630 family transposase	100.0	28.9	64.4
MGA_410	LOCUS_04090	sequence03:28741..29661(-)	partial			WP_002383749.1	glycosyltransferase family 2 protein	69.0	66.9	36.4
MGA_411	LOCUS_04100	sequence03:29658..30767(-)	partial			WP_011021207.1	glycosyltransferase	70.7	67.5	29.3
MGA_443	LOCUS_04420	sequence04:1..2255(+)	partial			WP_000527121.1	YSIRK signal domain/LPXTG anchor domain surface protein	98.5	29.2	29.4
MGA_466	LOCUS_04650	sequence04:25129..26043(+)	partial			WP_000759972.1	endo-beta-N-acetylglucosaminidase	96.4	69.1	74.7
MGA_526	LOCUS_05210	sequence05:27254..30073(-)	partial			WP_014748741.1	collagen-binding MSCRAMM adhesin Scm	20.6	34.5	24.1
MGA_575	LOCUS_05690	sequence06:29898..31331(-)	partial			WP_120171861.1	GBS Bsp-like repeat-containing protein	47.8	21.1	46.9
MGA_655	LOCUS_06490	sequence08:40255..40404(+)	partial			WP_000693301.1	hypothetical protein	98.0	68.6	89.6
MGA_659	LOCUS_06530	sequence09:372..587(-)	frameshift,internal_stop_codon	326..328(-),371..373(-),587..589(-)	712	WP_000057440.1	IS200/IS605 family transposase	100.0	46.1	91.5
MGA_677	LOCUS_06710	sequence09:17891..21256(-)	partial			WP_002864485.1	type II CRISPR RNA-guided endonuclease Cas9	66.1	72.4	28.7
MGA_701	LOCUS_06950	sequence10:4866..5090(+)	frameshift		5057	WP_000665619.1	lactonase family protein	87.8	19.3	95.4
MGA_702	LOCUS_06960	sequence10:5150..5878(+)	frameshift		5057	WP_000665633.1	lactonase family protein	100.0	71.8	95.9
MGA_820	LOCUS_08140	sequence12:78400..79215(-)	partial			WP_000655831.1	hypothetical protein	99.6	68.5	88.5
MGA_821	LOCUS_08150	sequence12:79212..79376(-)	partial			WP_000939892.1	ABC transporter ATP-binding protein	72.2	20.0	100.0
MGA_849	LOCUS_08430	sequence12:107324..108295(-)	partial			WP_000565077.1	O-antigen polysaccharide polymerase Wzy family protein	100.0	66.1	96.0
MGA_864	LOCUS_08580	sequence12:122704..124194(+)	frameshift,internal_stop_codon	122442..122444(+)	122543	WP_044012418.1	LTA synthase family protein	62.1	43.7	93.5
MGA_889	LOCUS_08830	sequence12:147631..147957(-)	frameshift		148037	WP_011836484.1	6-phospho-beta-glucosidase	100.0	22.5	81.5
MGA_890	LOCUS_08840	sequence12:147945..149069(-)	frameshift		148037	WP_011836484.1	6-phospho-beta-glucosidase	94.1	73.5	85.2
MGA_978	LOCUS_09720	sequence12:237715..244014(-)	partial			WP_000682781.1	G5 domain-containing protein	88.3	61.5	46.1
MGA_981	LOCUS_09750	sequence13:3022..3195(+)	partial			WP_020902488.1	hypothetical protein	96.5	10.5	85.5
MGA_998	LOCUS_09910	sequence14:6236..7969(-)	partial			WP_013399748.1	Rib/alpha-like domain-containing protein	35.5	6.9	33.5
MGA_999	LOCUS_09920	sequence14:8503..>9847(-)	partial			WP_000278319.1	CshA/CshB family fibrillar adhesin-related protein	97.3	12.5	27.4
MGA_1002	LOCUS_09930	sequence17:32..865(-)	frameshift		939	WP_140860145.1	IS3 family transposase	100.0	61.7	100.0
MGA_1003	LOCUS_09940	sequence17:865..>1436(-)	frameshift		939	WP_140860145.1	IS3 family transposase	77.8	32.7	100.0
MGA_1052	LOCUS_10420	sequence18:57310..57618(+)	frameshift		57215	WP_000031472.1	YkgJ family cysteine cluster protein	100.0	62.2	97.1
MGA_1061	LOCUS_10510	sequence18:64954..65463(+)	partial			WP_000072918.1	hypothetical protein	100.0	69.8	70.4
MGA_1116	LOCUS_11060	sequence18:143108..143440(-)	frameshift,internal_stop_codon	143107..143109(-),143062..143064(-)	143448	WP_000057440.1	IS200/IS605 family transposase	100.0	71.4	93.6
MGA_1148	LOCUS_11380	sequence18:181362..181562(+)	frameshift		181544,181361,181364,181175	WP_099091451.1	IS630 family transposase	87.9	20.5	51.7
MGA_1149	LOCUS_11390	sequence18:181583..181882(+)	frameshift		181360,181363,181543	WP_074390220.1	IS630 family transposase	92.9	32.6	51.1
MGA_1152	LOCUS_11420	sequence18:185358..185630(-)	frameshift,internal_stop_codon	185726..185728(-)	185695	WP_004269701.1	hypothetical protein	100.0	71.4	96.7
MGA_1153	LOCUS_11430	sequence18:185893..186024(+)	partial			WP_000268685.1	SPJ_0845 family protein	69.8	69.8	96.7
MGA_1163	LOCUS_11530	sequence18:194059..194187(-)	partial			WP_000900005.1	ADP-ribosylglycohydrolase family protein	90.5	13.4	100.0
MGA_1168	LOCUS_11580	sequence18:196782..197840(-)	partial			WP_000036818.1	hypothetical protein	99.7	67.8	69.5
MGA_1172	LOCUS_11620	sequence18:200246..200491(+)	frameshift		200228	WP_000540278.1	Y-family DNA polymerase	100.0	17.2	65.4
MGA_1199	LOCUS_11890	sequence18:223374..229961(-)	partial			WP_000251209.1	alpha-L-fucosidase	20.8	81.1	56.9
MGA_1229	LOCUS_12190	sequence19:25521..26558(-)	partial			WP_003703465.1	thioredoxin family protein	74.5	81.4	33.5
MGA_1231	LOCUS_12210	sequence19:27152..27340(-)	internal_stop_codon	27365..27367(-)		WP_003592458.1	hypothetical protein	93.5	54.7	58.6
MGA_1257	LOCUS_12470	sequence19:47499..55202(-)	partial			WP_000527121.1	YSIRK signal domain/LPXTG anchor domain surface protein	54.5	59.4	26.6
MGA_1299	LOCUS_12890	sequence19:102296..102868(-)	frameshift,internal_stop_codon	102932..102934(-)	103157	WP_120770310.1	ISL3 family transposase	92.1	41.9	93.7
MGA_1300	LOCUS_12900	sequence19:102932..103162(-)	frameshift,internal_stop_codon	102932..102934(-)	103157	WP_120770310.1	ISL3 family transposase	92.1	16.7	91.4
MGA_1301	LOCUS_12910	sequence19:103110..103529(-)	frameshift,internal_stop_codon	102932..102934(-)	103157	WP_120770310.1	ISL3 family transposase	89.2	29.7	93.5
MGA_1302	LOCUS_12920	sequence19:103732..110463(-)	partial			WP_226990688.1	leucine-rich repeat protein	28.1	38.1	30.8
MGA_1323	LOCUS_13130	sequence19:130013..130147(-)	partial			WP_000831905.1	50S ribosomal protein L34	59.1	59.1	100.0
MGA_1343	LOCUS_13330	sequence19:148522..148893(-)	partial			WP_001035601.1	leucine-rich repeat domain-containing protein	100.0	53.5	97.6
MGA_1344	LOCUS_13340	sequence19:149280..149525(-)	partial			WP_014207825.1	glutamate synthase subunit beta	93.8	15.9	43.4
MGA_1352	LOCUS_13420	sequence19:156152..158014(-)	partial			WP_209611650.1	DUF262 domain-containing protein	34.0	41.8	25.1
MGA_1353	LOCUS_13430	sequence19:158008..159318(-)	partial			WP_000301909.1	DUF262 domain-containing protein	40.8	37.2	29.2
MGA_1394	LOCUS_13840	sequence20:33596..34000(-)	partial			WP_001819883.1	M57 family metalloprotease	100.0	61.2	93.3
MGA_1419	LOCUS_14090	sequence20:63386..64534(-)	frameshift,internal_stop_codon	63380..63382(-)	63388	WP_002352261.1	restriction endonuclease subunit S	96.9	61.7	42.1
MGA_1423	LOCUS_14130	sequence20:68561..68827(-)	partial			WP_000167729.1	DUF6261 family protein	97.7	34.0	83.7
MGA_1450	LOCUS_14400	sequence20:96223..96783(-)	partial			WP_011836463.1	mechanosensitive ion channel family protein	96.2	62.4	60.9
MGA_1454	LOCUS_14440	sequence20:99601..99780(-)	partial			WP_001278706.1	accessory secretory system protein Asp4	66.1	66.1	97.4
MGA_1462	LOCUS_14520	sequence20:109830..110576(-)	frameshift,internal_stop_codon	110627..110629(-)	110708,110605	WP_001232160.1	glycosyltransferase family 8 protein	99.2	61.8	57.7
MGA_1468	LOCUS_14580	sequence20:118678..119136(-)	frameshift,internal_stop_codon	118677..118679(-),118569..118571(-),118539..118541(-)	119067,119151	WP_011836406.1	glycosyltransferase family 2 protein	84.9	47.8	34.8
MGA_1471	LOCUS_14610	sequence20:122680..123576(-)	partial			WP_000998260.1	glycosyltransferase	98.3	41.4	38.4
MGA_1472	LOCUS_14620	sequence20:123681..124559(-)	partial			WP_011071891.1	Vat family streptogramin A O-acetyltransferase	51.4	66.7	46.7
MGA_1547	LOCUS_15350	sequence21:74379..74504(+)	internal_stop_codon	74547..74549(+),74502..74504(+)		WP_164405178.1	helix-turn-helix transcriptional regulator	100.0	8.7	90.2
MGA_1548	LOCUS_15360	sequence21:75093..75236(-)	partial			WP_012028325.1	hypothetical protein	74.5	19.3	74.3
MGA_1596	LOCUS_15840	sequence21:115121..115852(+)	internal_stop_codon	115850..115852(+)		WP_120770055.1	ABC transporter permease	100.0	69.0	91.8
MGA_1597	LOCUS_15850	sequence21:115853..116179(+)	internal_stop_codon	115850..115852(+)		WP_000038674.1	ABC transporter permease	91.7	28.1	100.0
MGA_1615	LOCUS_16030	sequence22:15646..19356(-)	partial			WP_001032521.1	SpGH101 family endo-alpha-N-acetylgalactosaminidase	23.5	12.5	33.9
MGA_1643	LOCUS_16310	sequence22:45314..46096(-)	partial			WP_002263013.1	hypothetical protein	45.8	54.5	41.7
MGA_1653	LOCUS_16410	sequence22:56972..57880(+)	frameshift		56783	WP_011836378.1	low temperature requirement protein A	100.0	79.3	92.1
MGA_1655	LOCUS_16430	sequence22:60331..60495(+)	internal_stop_codon	60265..60267(+)		WP_000964738.1	GlsB/YeaQ/YmgE family stress response membrane protein	100.0	69.2	87.0
MGA_1706	LOCUS_16940	sequence22:109811..109960(-)	partial			WP_000082887.1	nuclear transport factor 2 family protein	100.0	19.3	93.9
MGA_1710	LOCUS_16980	sequence22:113312..113578(+)	frameshift		113557	WP_000436571.1	ISL3 family transposase	93.2	19.6	91.5
MGA_1711	LOCUS_16990	sequence22:113578..114033(+)	frameshift,internal_stop_codon	114119..114121(+)	113995,113557	WP_000436571.1	ISL3 family transposase	96.7	34.9	91.1
MGA_1712	LOCUS_17000	sequence22:114183..114578(+)	frameshift,internal_stop_codon	114118..114120(+)	113997	WP_000436571.1	ISL3 family transposase	96.9	30.4	86.6
MGA_1739	LOCUS_17260	sequence23:28905..29168(-)	internal_stop_codon	29214..29216(-)		WP_000621679.1	ABC transporter ATP-binding protein	100.0	31.8	64.4
MGA_1740	LOCUS_17270	sequence23:29214..29729(-)	internal_stop_codon	29214..29216(-)		WP_000621679.1	ABC transporter ATP-binding protein	100.0	62.4	69.0
MGA_1781	LOCUS_17680	sequence23:68637..68963(-)	partial			WP_001020625.1	XRE family transcriptional regulator	72.2	40.2	48.7
MGA_1786	LOCUS_17730	sequence23:71868..72506(+)	partial			WP_002263334.1	DUF6287 domain-containing protein	59.4	70.8	30.6
MGA_1797	LOCUS_17840	sequence23:83789..84058(+)	partial			WP_000693394.1	hypothetical protein	77.5	47.6	77.1
MGA_1810	LOCUS_17960	sequence24:16156..16332(-)	partial			WP_000048054.1	30S ribosomal protein S21	74.1	74.1	100.0
