{
    "type": "genome",
    "identifier": "GCF_006439335.1",
    "organism": "Litorilituus lipolyticus",
    "title": "Litorilituus lipolyticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jining Medical University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006439335.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10662229",
        "wgs_master": "SAWY00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2491017",
        "species_taxid": "2491017",
        "organism_name": "Litorilituus lipolyticus",
        "infraspecific_name": "strain=RZ04",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/24",
        "asm_name": "ASM643933v1",
        "asm_submitter": "Jining Medical University",
        "gbrs_paired_asm": "GCA_006439335.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/439/335/GCF_006439335.1_ASM643933v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4139778",
        "genome_size_ungapped": "4139528",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "41",
        "contig_count": "41",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006439335.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "3648",
        "protein_coding_gene_count": "3557",
        "non_coding_gene_count": "75",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-24",
    "dateModified": "2019-06-24",
    "datePublished": "2019-06-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Litorilituus lipolyticus"
        ],
        "sample_taxid": [
            "2491017"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Yellow Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.172 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 25.0,
            "max": 25.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4139778",
        "Number of Sequences": "41",
        "Longest Sequences (bp)": "330276",
        "N50 (bp)": "241396",
        "Gap Ratio (%)": "0.006039",
        "GCcontent (%)": "37.4",
        "Number of CDSs": "3596",
        "Average Protein Length": "338.0",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Litorilituus lipolyticus",
                "strain": "strain=RZ04",
                "accession": "GCA_006439335.1",
                "taxid": 2491017,
                "species_taxid": 2491017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1363,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Litorilituus sediminis",
                "strain": "strain=JCM 17549",
                "accession": "GCA_004295665.1",
                "taxid": 718192,
                "species_taxid": 718192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4789,
                "matched_fragments": 517,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia echini",
                "strain": "strain=A3",
                "accession": "GCA_002843355.2",
                "taxid": 1982103,
                "species_taxid": 1982103,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5242,
                "matched_fragments": 293,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia ponticola",
                "strain": "strain=OISW-25",
                "accession": "GCA_005885605.1",
                "taxid": 2304625,
                "species_taxid": 2304625,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3609,
                "matched_fragments": 299,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cognaticolwellia mytili",
                "strain": "strain=KCTC 52417",
                "accession": "GCA_002104475.1",
                "taxid": 1888913,
                "species_taxid": 1888913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3458,
                "matched_fragments": 212,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia demingiae",
                "strain": "strain=ACAM 459",
                "accession": "GCA_007954275.1",
                "taxid": 89401,
                "species_taxid": 89401,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3239,
                "matched_fragments": 347,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia piezophila",
                "strain": "strain=ATCC BAA-637",
                "accession": "GCA_000378625.1",
                "taxid": 211668,
                "species_taxid": 211668,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1374,
                "matched_fragments": 317,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia marinimaniae",
                "strain": "strain=MTCD1",
                "accession": "GCA_002207865.1",
                "taxid": 1513592,
                "species_taxid": 1513592,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1271,
                "matched_fragments": 316,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassotalea profundi",
                "strain": "strain=CGMCC 1.15922",
                "accession": "GCA_014653195.1",
                "taxid": 2036687,
                "species_taxid": 2036687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9086,
                "matched_fragments": 203,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassotalea agarivorans",
                "strain": "strain=DSM 19706",
                "accession": "GCA_900111755.1",
                "taxid": 349064,
                "species_taxid": 349064,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7759,
                "matched_fragments": 135,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas fuliginea",
                "strain": "strain=KMM 216",
                "accession": "GCA_000690055.1",
                "taxid": 1872678,
                "species_taxid": 1872678,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4031,
                "matched_fragments": 77,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoalteromonas rhizosphaerae",
                "strain": "strain=RA15",
                "accession": "GCA_902498845.1",
                "taxid": 2518973,
                "species_taxid": 2518973,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2805,
                "matched_fragments": 80,
                "total_fragments": 1363,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006439335.1",
                "gtdb_species": "s__Litorilituus lipolyticus",
                "ani": 100.0,
                "matched_fragments": 1363,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Litorilituus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003545765.1",
                "gtdb_species": "s__Litorilituus sp003545765",
                "ani": 81.9732,
                "matched_fragments": 843,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Litorilituus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004295665.1",
                "gtdb_species": "s__Litorilituus sediminis",
                "ani": 79.4806,
                "matched_fragments": 516,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Litorilituus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018860755.1",
                "gtdb_species": "s__Colwellia sp018860755",
                "ani": 78.7202,
                "matched_fragments": 322,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000764225.1",
                "gtdb_species": "s__Colwellia psychrerythraea_D",
                "ani": 78.4893,
                "matched_fragments": 348,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002836255.1",
                "gtdb_species": "s__Colwellia sp002836255",
                "ani": 78.3898,
                "matched_fragments": 372,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018860585.1",
                "gtdb_species": "s__Colwellia sp018860585",
                "ani": 78.3735,
                "matched_fragments": 296,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005885605.1",
                "gtdb_species": "s__Colwellia ponticola",
                "ani": 78.3609,
                "matched_fragments": 299,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007954275.1",
                "gtdb_species": "s__Colwellia demingiae",
                "ani": 78.3239,
                "matched_fragments": 347,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002163005.1",
                "gtdb_species": "s__Colwellia psychrerythraea_C",
                "ani": 78.3178,
                "matched_fragments": 299,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003333305.1",
                "gtdb_species": "s__Colwellia aromaticivorans",
                "ani": 78.3056,
                "matched_fragments": 293,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018860915.1",
                "gtdb_species": "s__Colwellia sp018860915",
                "ani": 78.2569,
                "matched_fragments": 285,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000764185.1",
                "gtdb_species": "s__Colwellia psychrerythraea_B",
                "ani": 78.2485,
                "matched_fragments": 357,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000012325.1",
                "gtdb_species": "s__Colwellia psychrerythraea_A",
                "ani": 78.2463,
                "matched_fragments": 358,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.43",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900111755.1",
                "gtdb_species": "s__Thalassotalea_D agarivorans",
                "ani": 77.8045,
                "matched_fragments": 134,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017744155.1",
                "gtdb_species": "s__Thalassotalea sp017744155",
                "ani": 77.7858,
                "matched_fragments": 143,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001913705.1",
                "gtdb_species": "s__Thalassotalea_C sp001913705",
                "ani": 77.755,
                "matched_fragments": 163,
                "total_fragments": 1363,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Litorilituus",
        "lipolyticus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}