{ "type": "genome", "identifier": "GCF_006459125.1", "organism": "Halarcobacter anaerophilus", "title": "Halarcobacter anaerophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA, ARS, WRRC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006459125.1", "bioproject": "PRJNA224116", "biosample": "SAMN10884411", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "877500", "species_taxid": "877500", "organism_name": "Halarcobacter anaerophilus", "infraspecific_name": "strain=DSM 24636", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/25", "asm_name": "ASM645912v1", "asm_submitter": "USDA, ARS, WRRC", "gbrs_paired_asm": "GCA_006459125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/459/125/GCF_006459125.1_ASM645912v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3016922", "genome_size_ungapped": "3016922", "gc_percent": "30.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006459125.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3010", "protein_coding_gene_count": "2937", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-25", "dateModified": "2019-06-25", "datePublished": "2019-06-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Halarcobacter anaerophilus" ], "sample_taxid": [ "877500" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: West Bengal, Gangasagar" ], "sample_host_location_id": [], "data_size": "0.816 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3016922", "Number of Sequences": "1", "Longest Sequences (bp)": "3016922", "N50 (bp)": "3016922", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.0", "Number of CDSs": "2944", "Average Protein Length": "319.0", "Coding Ratio (%)": "93.4", "Number of rRNAs": "12", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_006459125.1", "taxid": 877500, "species_taxid": 877500, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1001, "total_fragments": 1005, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_004116345.1", "taxid": 877500, "species_taxid": 877500, "relation_to_type": "type", "validated": true, "ani": 99.9857, "matched_fragments": 970, "total_fragments": 1005, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=LMG 27922", "accession": "GCA_013201825.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 80.4113, "matched_fragments": 601, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=CECT 8441", "accession": "GCA_004116565.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 80.2514, "matched_fragments": 593, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { 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